Zm00001e017809_P001 (ATGCN1, GCN1, Zm00001e017809)

Aliases : ATGCN1, GCN1, Zm00001e017809

Description : ABC transporter F family member 1 OS=Arabidopsis thaliana (sp|q9fjh6|ab1f_arath : 955.0)

Gene families : OG0003164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003164_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e017809_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00176080	ATGCN1, GCN1,...	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Als_g40172	ATGCN1, GCN1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g05138	ATGCN1, GCN1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01343	ATGCN1, GCN1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000383.51	ATGCN1, GCN1	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Cre01.g023787	ATGCN1, GCN1	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre11.g467781	ATGCN1, GCN1	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Ehy_g06018	ATGCN1, GCN1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01031505001	ATGCN1, GCN1	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Lfl_g01954	ATGCN1, GCN1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp6g18410.1	ATGCN1, GCN1	ABC transporter F family member 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Smo154355	ATGCN1, GCN1	ABC transporter F family member 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Zm00001e039565_P001	ATGCN1, GCN1,...	ABC transporter F family member 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	87	241
IPR032781	ABC_tran_Xtn	280	352
IPR003439	ABC_transporter-like_ATP-bd	397	527

External Links

No external refs found!

Zm00001e017809_P001 (ATGCN1, GCN1, Zm00001e017809)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation