Aliases : Zm00001e015692
Description : OLI2 LSU processome maturation factor
Gene families : OG0004210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004210_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e015692_P001 | |
Cluster | HCCA: Cluster_59 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00061p00211510 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder output from all 47 species | |
AT4G26600 | No alias | S-adenosyl-L-methionine-dependent methyltransferases... | 0.13 | OrthoFinder output from all 47 species | |
AT5G55920 | OLI2 | S-adenosyl-L-methionine-dependent methyltransferases... | 0.08 | OrthoFinder output from all 47 species | |
Adi_g015441 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g02479 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g02438 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g47688 | OLI2 | rRNA methyltransferase *(NOP2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aop_g05130 | OLI2 | rRNA methyltransferase *(NOP2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Azfi_s0003.g007898 | OLI2 | rRNA methyltransferase *(NOP2) & original description: CDS=1-1743 | 0.03 | OrthoFinder output from all 47 species | |
Ceric.38G044600.1 | Ceric.38G044600 | rRNA methyltransferase *(NOP2) & original description:... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000114.21 | OLI2 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | OrthoFinder output from all 47 species | |
Cre06.g273413 | OLI2 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | OrthoFinder output from all 47 species | |
Dac_g20948 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g13909 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Ehy_g09182 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01014717001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.13 | OrthoFinder output from all 47 species | |
GSVIVT01014718001 | OLI2 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.09 | OrthoFinder output from all 47 species | |
Gb_02482 | No alias | OLI2 LSU processome maturation factor | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os02g49270.1 | LOC_Os02g49270 | OLI2 LSU processome maturation factor | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os09g37860.1 | LOC_Os09g37860 | OLI2 LSU processome maturation factor | 0.13 | OrthoFinder output from all 47 species | |
MA_10427534g0030 | No alias | OLI2 LSU processome maturation factor | 0.05 | OrthoFinder output from all 47 species | |
Mp6g04100.1 | No alias | OLI2 LSU processome maturation factor | 0.14 | OrthoFinder output from all 47 species | |
Sam_g17866 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Smo437511 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
Solyc02g079415.1.1 | Solyc02g079415 | OLI2 LSU processome maturation factor | 0.06 | OrthoFinder output from all 47 species | |
Solyc07g052110.4.1 | Solyc07g052110 | OLI2 LSU processome maturation factor | 0.09 | OrthoFinder output from all 47 species | |
Spa_g52054 | No alias | rRNA methyltransferase *(NOP2) & original description: none | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | HCCA |
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004814 | arginine-tRNA ligase activity | IEP | HCCA |
MF | GO:0004826 | phenylalanine-tRNA ligase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006432 | phenylalanyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |