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  5. Zm00001e012079_P002

Zm00001e012079_P002 (HOS1, Zm00001e012079)


Aliases : HOS1, Zm00001e012079

Description : ELYS scaffold nucleoporin of nuclear pore complex


Gene families : OG0005065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012079_P002
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT2G39810 HOS1 ubiquitin-protein ligases 0.05 OrthoFinder output from all 47 species
Aev_g45022 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Ala_g10365 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Als_g56636 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Aop_g13573 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009860 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Cba_g25679 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Ceric.36G007400.1 HOS1, Ceric.36G007400 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Cre16.g683437 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g15962 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Dcu_g07754 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.05 OrthoFinder output from all 47 species
Ehy_g07914 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01005813001 HOS1 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
LOC_Os03g52700.1 HOS1, LOC_Os03g52700 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Len_g09049 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
MA_10431906g0010 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
MA_573521g0010 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Sam_g19447 No alias scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Solyc08g078320.3.1 HOS1, Solyc08g078320 ELYS scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Spa_g09103 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Tin_g16985 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR025151 ELYS_dom 188 468
No external refs found!