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  5. Zm00001e011879_P001

Zm00001e011879_P001 (EIN5, AIN1, XRN4,...)


Aliases : EIN5, AIN1, XRN4, ATXRN4, Zm00001e011879

Description : EBF-modulating exoribonuclease (EIN5/XRN4). exoribonuclease (XRN4)


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011879_P001
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00046450 EIN5, AIN1,... RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00024460 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00491p00000370 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT1G54490 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease 4 0.04 OrthoFinder output from all 47 species
AT5G42540 XRN2, AtXRN2 exoribonuclease 2 0.03 OrthoFinder output from all 47 species
Adi_g056473 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17886 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02515 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15103 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g07461 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21055 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06747 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g11344 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15159.t1 XRN3, AtXRN3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45037.t1 XRN3, AtXRN3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60935.t1 XRN3, AtXRN3,... exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67536.t1 XRN3, AtXRN3,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene67539.t1 XRN3, AtXRN3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0149.g053258 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=205-3336 0.04 OrthoFinder output from all 47 species
Cba_g15355 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16564 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75294 XRN3, AtXRN3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G059400.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.1 OrthoFinder output from all 47 species
Ceric.30G049400.1 XRN3, AtXRN3,... exoribonuclease *(RAT1/XRN2) & original description:... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.176 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g07777 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05069 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06196 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009879001 XRN3, AtXRN3 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01021865001 EIN5, AIN1, XRN4, ATXRN4 RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
LOC_Os01g65220.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.02 OrthoFinder output from all 47 species
LOC_Os03g58060.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.18 OrthoFinder output from all 47 species
Len_g50910 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06753 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g19229 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.09 OrthoFinder output from all 47 species
MA_10430844g0010 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.02 OrthoFinder output from all 47 species
MA_17503g0010 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Mp3g08820.1 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.05 OrthoFinder output from all 47 species
Msp_g13176 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13698 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19704 EIN5, AIN1, XRN4, ATXRN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19708 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g01687 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03252 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g17525 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012142 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=244-3387 0.03 OrthoFinder output from all 47 species
Sam_g12064 No alias exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38845 No alias exoribonuclease *(XRN4) & original description: none 0.09 OrthoFinder output from all 47 species
Solyc04g049010.3.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.04 OrthoFinder output from all 47 species
Solyc04g081280.3.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.07 OrthoFinder output from all 47 species
Solyc12g089280.2.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.03 OrthoFinder output from all 47 species
Tin_g01285 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46210 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 410 715
IPR041412 Xrn1_helical 323 424
IPR004859 Xrn1_N 1 254
IPR001878 Znf_CCHC 264 278
No external refs found!