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  5. Zm00001e011580_P001

Zm00001e011580_P001 (Zm00001e011580)


Aliases : Zm00001e011580

Description : SSU processome assembly factor (UTP6)


Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011580_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT4G28200 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.13 OrthoFinder output from all 47 species
Aev_g01496 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Aop_g08502 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s2889.g113567 No alias SSU processome assembly factor *(UTP6) & original... 0.04 OrthoFinder output from all 47 species
Cba_g07642 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Ceric.34G074700.1 Ceric.34G074700 SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.29 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre10.g442000 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Dcu_g08199 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g03852 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01012705001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os02g01350.1 LOC_Os02g01350 SSU processome assembly factor (UTP6) 0.09 OrthoFinder output from all 47 species
MA_10435952g0010 No alias SSU processome assembly factor (UTP6) 0.1 OrthoFinder output from all 47 species
Mp7g18520.1 No alias SSU processome assembly factor (UTP6) 0.1 OrthoFinder output from all 47 species
Pir_g09702 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g16083 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009974 No alias chloroplast import factor *(PRAT1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g29993 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013949 Utp6 9 77
No external refs found!