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  5. Zm00001e008048_P001

Zm00001e008048_P001 (TIC40, ATTIC40,...)


Aliases : TIC40, ATTIC40, PDE120, Zm00001e008048

Description : component Tic40 of inner envelope TIC translocation system


Gene families : OG0004334 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e008048_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00175860 TIC40, ATTIC40,... Protein translocation.chloroplast.inner envelope TIC... 0.09 OrthoFinder output from all 47 species
AT5G16620 TIC40, ATTIC40, PDE120 hydroxyproline-rich glycoprotein family protein 0.08 OrthoFinder output from all 47 species
Aev_g04027 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Aob_g40292 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Aop_g04288 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene34885.t1 Aspi01Gene34885 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g001023 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.06 OrthoFinder output from all 47 species
Azfi_s0109.g045418 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Cba_g25182 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Ceric.35G014600.1 TIC40, ATTIC40,... component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Cre12.g508000 TIC40, ATTIC40, PDE120 Protein translocation.chloroplast.inner envelope TIC... 0.08 OrthoFinder output from all 47 species
Dcu_g04022 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.02 OrthoFinder output from all 47 species
Ehy_g02550 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.02 OrthoFinder output from all 47 species
Ehy_g07643 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.02 OrthoFinder output from all 47 species
GSVIVT01025999001 TIC40, ATTIC40, PDE120 Protein translocation.chloroplast.inner envelope TIC... 0.02 OrthoFinder output from all 47 species
LOC_Os04g35900.1 TIC40, ATTIC40,... component Tic40 of inner envelope TIC translocation system 0.08 OrthoFinder output from all 47 species
Len_g12504 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.09 OrthoFinder output from all 47 species
MA_10433034g0010 TIC40, ATTIC40, PDE120 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp3g00830.1 TIC40, ATTIC40, PDE120 component Tic40 of inner envelope TIC translocation system 0.04 OrthoFinder output from all 47 species
Nbi_g01024 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.06 OrthoFinder output from all 47 species
Ore_g04200 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.05 OrthoFinder output from all 47 species
Ore_g25748 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.05 OrthoFinder output from all 47 species
Pir_g16159 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.02 OrthoFinder output from all 47 species
Pnu_g13431 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0187.g025125 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.06 OrthoFinder output from all 47 species
Smo437721 TIC40, ATTIC40, PDE120 Protein translocation.chloroplast.inner envelope TIC... 0.03 OrthoFinder output from all 47 species
Solyc11g020300.2.1 TIC40, ATTIC40,... component Tic40 of inner envelope TIC translocation system 0.06 OrthoFinder output from all 47 species
Spa_g08190 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.09 OrthoFinder output from all 47 species
Spa_g18919 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041243 STI1/HOP_DP 373 424
No external refs found!