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  5. Zm00001e006550_P001

Zm00001e006550_P001 (Zm00001e006550)


Aliases : Zm00001e006550

Description : no hits & (original description: none)


Gene families : OG0001730 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006550_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00138820 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00147p00104660 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT1G53250 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT1G53800 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.05 OrthoFinder output from all 47 species
Als_g61934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08952 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene13943.t1 Aspi01Gene13943 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065792 No alias not classified & original description: CDS=123-1853 0.04 OrthoFinder output from all 47 species
Cba_g09085 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g60241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G079500.1 Ceric.21G079500 not classified & original description: pacid=50604458... 0.08 OrthoFinder output from all 47 species
Dcu_g09615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01308 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01014224001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01016660001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_18962 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os10g12354.1 LOC_Os10g12354 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g50748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19929 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_643462g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp6g14930.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g11885 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012057 No alias not classified & original description: CDS=33-1778 0.03 OrthoFinder output from all 47 species
Sam_g28963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo439642 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc03g123700.4.1 Solyc03g123700 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc12g014220.3.1 Solyc12g014220 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g21150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24050 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003611 NUMOD3 80 108
No external refs found!