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  5. Gb_34809

Gb_34809 (WTF1, AtWTF1)


Aliases : WTF1, AtWTF1

Description : WTF1 plastidial RNA basal splicing factor


Gene families : OG0001240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34809
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.04 OrthoFinder output from all 47 species
AT5G21970 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.04 OrthoFinder output from all 47 species
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.04 OrthoFinder output from all 47 species
Aop_g37366 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g17771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.24G041500.1 WTF1, AtWTF1,... plastidial RNA basal splicing factor *(WTF1) & original... 0.04 OrthoFinder output from all 47 species
Ceric.25G074200.1 WTF1, AtWTF1,... not classified & original description: pacid=50593386... 0.04 OrthoFinder output from all 47 species
Dac_g20695 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.04 OrthoFinder output from all 47 species
Dde_g18275 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01027077001 WTF1, AtWTF1 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
MA_423098g0010 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Msp_g11347 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04260 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08880 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g06540 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09523 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004928 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.04 OrthoFinder output from all 47 species
Sam_g35883 No alias plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e000591_P002 Zm00001e000591 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 85 416
No external refs found!