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  5. Gb_30516

Gb_30516 (POK, TTD8, ATVPS52)


Aliases : POK, TTD8, ATVPS52

Description : component VPS52/POK of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes


Gene families : OG0004170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30516

Target Alias Description ECC score Gene Family Method Actions
AT1G71270 POK, TTD8, ATVPS52 Vps52 / Sac2 family 0.03 OrthoFinder output from all 47 species
Ala_g13519 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Als_g22344 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Ceric.05G039600.1 POK, TTD8,... component *(VPS52/POK) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
LOC_Os03g30460.1 POK, TTD8,... component VPS52/POK of GARP/EARP... 0.04 OrthoFinder output from all 47 species
MA_196188g0010 POK, TTD8, ATVPS52 Vacuolar protein sorting-associated protein 52 A... 0.03 OrthoFinder output from all 47 species
Mp6g21530.1 POK, TTD8, ATVPS52 component VPS52/POK of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Smo235014 POK, TTD8, ATVPS52 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Solyc02g094090.4.1 POK, TTD8,... component VPS52/POK of GARP/EARP... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007258 Vps52 80 579
No external refs found!