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  5. Gb_28330

Gb_28330


Description : no hits & (original description: none)


Gene families : OG0002966 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002966_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28330
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00084p00036460 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT5G24740 No alias Protein of unknown function (DUF1162) 0.04 OrthoFinder output from all 47 species
Adi_g011972 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g14267 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g05069 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26570.t2 Aspi01Gene26570 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0359.g066851 No alias not classified & original description: CDS=121-8928 0.03 OrthoFinder output from all 47 species
Ceric.03G037800.1 Ceric.03G037800 not classified & original description: pacid=50571745... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.91 No alias No description available 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.92 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.51 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.50 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.86 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g05849 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g09937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019366001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01019369001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01019371001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os08g02350.1 LOC_Os08g02350 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g13250.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Pir_g05470 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17461 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo439148 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc11g045140.1.1 Solyc11g045140 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g22653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029198_P001 Zm00001e029198 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR031645 VPS13_DH-like 3156 3333
IPR031646 VPS13_extend_chorein 135 375
IPR026854 VPS13-like_N 2 115
IPR031642 VPS13_mid_RBG 615 832
IPR009543 VPS13_VAB 2568 2824
No external refs found!