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Gb_21554


Description : Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana (sp|q9fzd1|ppr58_arath : 712.0)


Gene families : OG0003481 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003481_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_21554

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00121530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g26460,... 0.02 OrthoFinder output from all 47 species
AT1G26460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aop_g11727 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52223.t2 Aspi01Gene52223 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g40800.1 LOC_Os07g40800 Pentatricopeptide repeat-containing protein At1g26460,... 0.09 OrthoFinder output from all 47 species
MA_10436610g0010 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.05 OrthoFinder output from all 47 species
Mp1g25580.1 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.05 OrthoFinder output from all 47 species
Ppi_g03144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g012390.4.1 Solyc05g012390 Pentatricopeptide repeat-containing protein At1g26460,... 0.07 OrthoFinder output from all 47 species
Spa_g26358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010701_P001 Zm00001e010701 Pentatricopeptide repeat-containing protein At1g26460,... 0.04 OrthoFinder output from all 47 species
Zm00001e035476_P002 Zm00001e035476 Pentatricopeptide repeat-containing protein At1g26460,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 219
IPR002885 Pentatricopeptide_repeat 522 567
No external refs found!