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  5. Gb_05124

Gb_05124 (FCA)


Aliases : FCA

Description : no description available(sp|b8bcz8|fca_orysi : 224.0)


Gene families : OG0001208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05124
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00168380 FCA,... Flowering time control protein FCA OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g021978 FCA transcription factor *(FCA/SSF) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g023113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G023200.1 FCA, Ceric.04G023200 transcription factor *(FCA/SSF) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.14G007400.1 FCA, Ceric.14G007400 transcription factor *(FCA/SSF) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.19G065300.1 RBP-DR1,... not classified & original description: pacid=50575797... 0.04 OrthoFinder output from all 47 species
Dac_g03249 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18569 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43236 FCA transcription factor *(FCA/SSF) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g31360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03762 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07627 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07629 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13021 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19292 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01034966001 FCA Flowering time control protein FCA OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os09g03610.1 FCA, LOC_Os09g03610 no description available(sp|q6k271|fca_orysj : 775.0) 0.05 OrthoFinder output from all 47 species
Lfl_g06188 FCA transcription factor *(FCA/SSF) & original description: none 0.07 OrthoFinder output from all 47 species
MA_114047g0010 FCA Flowering time control protein FCA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_5779g0010 FCA Flowering time control protein FCA OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp5g13560.1 RBP-DR1, AtRBP-DR1 RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Mp7g15600.1 FCA Flowering time control protein FCA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g11080 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19709 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05004 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13897 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g24304 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019799 FCA transcription factor *(FCA/SSF) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g07218 No alias transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g058450.3.1 FCA, Solyc01g058450 Flowering time control protein FCA OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Spa_g26694 FCA transcription factor *(FCA/SSF) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g56153 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20389 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e009433_P002 FCA, Zm00001e009433 no description available(sp|b8bcz8|fca_orysi : 625.0) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 55 119
IPR001202 WW_dom 517 545
No external refs found!