ATCG00490 (RBCL)

Aliases : RBCL

Description : ribulose-bisphosphate carboxylases

Gene families : OG0002607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002607_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00490
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00272640	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba	0.13	OrthoFinder output from all 47 species
AMTR_s00012p00184400	RBCL,...	Ribulose bisphosphate carboxylase large chain...	0.13	OrthoFinder output from all 47 species
AMTR_s00606p00006850	RBCL,...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.13	OrthoFinder output from all 47 species
AT2G07732	No alias	Ribulose bisphosphate carboxylase large chain, catalytic domain	0.03	OrthoFinder output from all 47 species
Aev_g01070	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.35	OrthoFinder output from all 47 species
Als_g11735	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.09	OrthoFinder output from all 47 species
Azfi_s0033.g025103	No alias	not classified & original description: CDS=1-594	0.03	OrthoFinder output from all 47 species
Cba_g06423	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.1	OrthoFinder output from all 47 species
Ceric.02G014200.1	RBCL, Ceric.02G014200	large subunit of ribulose-1,5-bisphosphat...	0.14	OrthoFinder output from all 47 species
Ceric.02G046100.1	RBCL, Ceric.02G046100	large subunit of ribulose-1,5-bisphosphat...	0.04	OrthoFinder output from all 47 species
Ceric.11G075000.1	RBCL, Ceric.11G075000	not classified & original description: pacid=50595488...	0.1	OrthoFinder output from all 47 species
Ceric.16G059900.1	RBCL, Ceric.16G059900	not classified & original description: pacid=50589806...	0.08	OrthoFinder output from all 47 species
Ceric.1Z018000.1	RBCL, Ceric.1Z018000	not classified & original description: pacid=50586374...	0.09	OrthoFinder output from all 47 species
Ceric.1Z021900.1	RBCL, Ceric.1Z021900	large subunit of ribulose-1,5-bisphosphat...	0.11	OrthoFinder output from all 47 species
Ceric.1Z141800.1	RBCL, Ceric.1Z141800	large subunit of ribulose-1,5-bisphosphat...	0.08	OrthoFinder output from all 47 species
Ceric.1Z162100.1	RBCL, Ceric.1Z162100	large subunit of ribulose-1,5-bisphosphat...	0.02	OrthoFinder output from all 47 species
Ceric.29G033400.1	RBCL, Ceric.29G033400	large subunit of ribulose-1,5-bisphosphat...	0.15	OrthoFinder output from all 47 species
Ceric.35G017400.1	RBCL, Ceric.35G017400	not classified & original description: pacid=50581736...	0.19	OrthoFinder output from all 47 species
Ceric.36G040400.1	RBCL, Ceric.36G040400	not classified & original description: pacid=50569251...	0.05	OrthoFinder output from all 47 species
Ceric.38G006500.1	RBCL, Ceric.38G006500	large subunit of ribulose-1,5-bisphosphat...	0.18	OrthoFinder output from all 47 species
Dcu_g16071	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.04	OrthoFinder output from all 47 species
Dde_g00694	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
Ehy_g08300	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
GSVIVT01013856001	RBCL	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.12	OrthoFinder output from all 47 species
GSVIVT01022403001	RBCL	Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban	0.09	OrthoFinder output from all 47 species
Gb_07644	RBCL	Ribulose bisphosphate carboxylase large chain...	0.16	OrthoFinder output from all 47 species
Gb_15502	RBCL	Ribulose bisphosphate carboxylase large chain...	0.16	OrthoFinder output from all 47 species
Gb_18620	RBCL	Ribulose bisphosphate carboxylase large chain...	0.03	OrthoFinder output from all 47 species
Gb_34523	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.07	OrthoFinder output from all 47 species
Gb_37464	RBCL	Ribulose bisphosphate carboxylase large chain...	0.16	OrthoFinder output from all 47 species
LOC_Os01g58020.1	RBCL, LOC_Os01g58020	Ribulose bisphosphate carboxylase large chain OS=Oryza...	0.29	OrthoFinder output from all 47 species
LOC_Os05g35330.1	RBCL, LOC_Os05g35330	Ribulose bisphosphate carboxylase large chain OS=Oryza...	0.03	OrthoFinder output from all 47 species
LOC_Os10g21268.1	RBCL, LOC_Os10g21268	large subunit of ribulose-1,5-bisphosphat...	0.39	OrthoFinder output from all 47 species
LOC_Os11g32770.1	LOC_Os11g32770	Ribulose bisphosphate carboxylase large chain OS=Oryza...	0.08	OrthoFinder output from all 47 species
LOC_Os12g10580.1	RBCL, LOC_Os12g10580	component psRPS15 of small ribosomal subunit proteome	0.37	OrthoFinder output from all 47 species
Len_g01809	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
Lfl_g07296	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.17	OrthoFinder output from all 47 species
MA_103636g0010	RBCL	Ribulose bisphosphate carboxylase large chain...	0.03	OrthoFinder output from all 47 species
Mp3g01300.1	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
Msp_g16802	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.04	OrthoFinder output from all 47 species
Nbi_g02076	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
Ore_g01544	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.19	OrthoFinder output from all 47 species
Pir_g10235	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.07	OrthoFinder output from all 47 species
Pnu_g02095	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.02	OrthoFinder output from all 47 species
Ppi_g08990	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002257	RBCL	not classified & original description: CDS=1-450	0.13	OrthoFinder output from all 47 species
Sacu_v1.1_s0313.g027218	RBCL	not classified & original description: CDS=1-270	0.14	OrthoFinder output from all 47 species
Sam_g02085	No alias	large subunit of ribulose-1,5-bisphosphat...	0.07	OrthoFinder output from all 47 species
Smo137874	RBCL	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.18	OrthoFinder output from all 47 species
Solyc00g500063.1.1	RBCL, Solyc00g500063	large subunit of ribulose-1,5-bisphosphat...	0.41	OrthoFinder output from all 47 species
Solyc07g021200.1.1	RBCL, Solyc07g021200	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.3	OrthoFinder output from all 47 species
Solyc12g062540.3.1	RBCL, Solyc12g062540	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.02	OrthoFinder output from all 47 species
Solyc12g062550.1.1	RBCL, Solyc12g062550	Ribulose bisphosphate carboxylase large chain OS=Solanum...	0.04	OrthoFinder output from all 47 species
Solyc12g062560.1.1	RPOC1, Solyc12g062560	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.07	OrthoFinder output from all 47 species
Zm00001e002755_P001	RBCL, Zm00001e002755	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.04	OrthoFinder output from all 47 species
Zm00001e031080_P001	RBCL, Zm00001e031080	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.1	OrthoFinder output from all 47 species
Zm00001e042029_P001	RBCL, Zm00001e042029	large subunit of ribulose-1,5-bisphosphat...	0.12	OrthoFinder output from all 47 species
Zm00001e042051_P001	RBCL, Zm00001e042051	large subunit of ribulose-1,5-bisphosphat...	0.13	OrthoFinder output from all 47 species
Zm00001e042083_P001	RBCL, Zm00001e042083	large subunit of ribulose-1,5-bisphosphat...	0.16	OrthoFinder output from all 47 species
Zm00001e042095_P001	RBCL, Zm00001e042095	large subunit of ribulose-1,5-bisphosphat...	0.15	OrthoFinder output from all 47 species
Zm00001e042403_P001	RBCL, Zm00001e042403	large subunit of ribulose-1,5-bisphosphat...	0.15	OrthoFinder output from all 47 species
Zm00001e042465_P001	RBCL, Zm00001e042465	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009507	chloroplast	TAS	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0010287	plastoglobule	IDA	Interproscan
BP	GO:0015977	carbon fixation	TAS	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	TAS	Interproscan
BP	GO:0017014	protein nitrosylation	None	Extended
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IDA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018198	peptidyl-cysteine modification	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	IEP	HCCA
CC	GO:0000315	organellar large ribosomal subunit	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003959	NADPH dehydrogenase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006175	dATP biosynthetic process	IEP	HCCA
BP	GO:0006176	dATP biosynthetic process from ADP	IEP	HCCA
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009106	lipoate metabolic process	IEP	HCCA
BP	GO:0009108	obsolete coenzyme biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009151	purine deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009153	purine deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009200	deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009215	purine deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009216	purine deoxyribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009265	2'-deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
CC	GO:0009512	cytochrome b6f complex	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009539	photosystem II reaction center	IEP	HCCA
CC	GO:0009544	chloroplast ATP synthase complex	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009768	photosynthesis, light harvesting in photosystem I	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	HCCA
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0030095	chloroplast photosystem II	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042776	proton motive force-driven mitochondrial ATP synthesis	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0045158	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	IEP	HCCA
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046060	dATP metabolic process	IEP	HCCA
BP	GO:0046385	deoxyribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0048564	photosystem I assembly	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017443	RuBisCO_lsu_fd_N	24	144
IPR000685	RuBisCO_lsu_C	154	462

External Links

No external refs found!

ATCG00490 (RBCL)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation