1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G40160

AT5G40160 (EMB139, EMB506)


Aliases : EMB139, EMB506

Description : Ankyrin repeat family protein


Gene families : OG0002523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002523_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G40160
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138080 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
Adi_g032639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g10996 EMB139, EMB506 regulatory protein *(Emb506) of embryogenesis & original... 0.03 OrthoFinder output from all 47 species
Als_g07552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0212.g058202 No alias not classified & original description: CDS=359-1396 0.04 OrthoFinder output from all 47 species
Azfi_s0371.g067116 EMB16, EMB2036, AKRP not classified & original description: CDS=69-1934 0.04 OrthoFinder output from all 47 species
Ceric.14G014700.1 Ceric.14G014700 not classified & original description: pacid=50633928... 0.05 OrthoFinder output from all 47 species
Dac_g10355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005198001 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.07 OrthoFinder output from all 47 species
Gb_02757 EMB139, EMB506 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_04520 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os03g04300.3 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os06g13000.1 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.1 OrthoFinder output from all 47 species
Nbi_g00869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16350 EMB139, EMB506 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g52287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g061820.4.1 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.09 OrthoFinder output from all 47 species
Zm00001e025292_P002 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000741 karyogamy IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007006 mitochondrial membrane organization IEP HCCA
BP GO:0007007 inner mitochondrial membrane organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010197 polar nucleus fusion IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042407 cristae formation IEP HCCA
CC GO:0042644 chloroplast nucleoid IEP HCCA
CC GO:0042646 plastid nucleoid IEP HCCA
BP GO:0042780 tRNA 3'-end processing IEP HCCA
MF GO:0042781 3'-tRNA processing endoribonuclease activity IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 199 280
No external refs found!