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  5. AT5G38410

AT5G38410


Description : Ribulose bisphosphate carboxylase (small chain) family protein


Gene families : OG0000735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G38410

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.19 OrthoFinder output from all 47 species
Ala_g09842 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Als_g60911 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Aob_g24117 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Aob_g33021 No alias small subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
Aob_g41554 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Aop_g21743 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45745.t1 RBCS1A, Aspi01Gene45745 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Cba_g37481 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Cba_g39071 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.09G050600.1 RBCS1A, Ceric.09G050600 small subunit of ribulose-1,5-bisphosphat... 0.2 OrthoFinder output from all 47 species
Ceric.09G050700.1 RBCS1A, Ceric.09G050700 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ceric.09G050800.1 RBCS1A, Ceric.09G050800 small subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Ceric.09G050900.1 RBCS1A, Ceric.09G050900 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ceric.09G051100.1 RBCS1A, Ceric.09G051100 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Ceric.09G051300.1 RBCS1A, Ceric.09G051300 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Ceric.09G051400.1 RBCS1A, Ceric.09G051400 small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Ceric.09G051600.1 RBCS1A, Ceric.09G051600 small subunit of ribulose-1,5-bisphosphat... 0.19 OrthoFinder output from all 47 species
Ceric.09G051700.1 RBCS1A, Ceric.09G051700 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Ceric.09G051800.1 RBCS1A, Ceric.09G051800 small subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
Cre02.g120100 RBCS1A Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Cre02.g120150 RBCS1A Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Dcu_g09882 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Dcu_g20638 No alias small subunit of ribulose-1,5-bisphosphat... 0.15 OrthoFinder output from all 47 species
Dcu_g33446 No alias small subunit of ribulose-1,5-bisphosphat... 0.16 OrthoFinder output from all 47 species
Dcu_g51202 No alias small subunit of ribulose-1,5-bisphosphat... 0.16 OrthoFinder output from all 47 species
Dde_g36766 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.2 OrthoFinder output from all 47 species
Ehy_g04204 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
GSVIVT01008288001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.13 OrthoFinder output from all 47 species
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.18 OrthoFinder output from all 47 species
Gb_00381 No alias small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
LOC_Os12g17600.1 RBCS1A, LOC_Os12g17600 small subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
LOC_Os12g19381.1 RBCS1A, LOC_Os12g19381 small subunit of ribulose-1,5-bisphosphat... 0.13 OrthoFinder output from all 47 species
LOC_Os12g19470.2 RBCS1A, LOC_Os12g19470 small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
MA_327467g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
Mp4g06020.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Mp4g06030.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g06050.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Mp4g10850.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Mp4g15070.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Nbi_g16796 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
Pir_g54622 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
Pir_g63695 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Pnu_g12024 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Pp3c13_15786V3.1 Pp3c13_15786 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c13_15910V3.1 RBCS1A, Pp3c13_15910 ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from all 47 species
Pp3c19_1840V3.1 RBCS1A, Pp3c19_1840 Ribulose bisphosphate carboxylase (small chain) family protein 0.01 OrthoFinder output from all 47 species
Pp3c3_14510V3.1 RBCS1A, Pp3c3_14510 ribulose bisphosphate carboxylase small chain 1A 0.06 OrthoFinder output from all 47 species
Pp3c3_20140V3.1 RBCS1A, Pp3c3_20140 ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from all 47 species
Ppi_g31547 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ppi_g31548 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ppi_g32726 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ppi_g55098 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ppi_g60704 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021603 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Sam_g23016 No alias small subunit of ribulose-1,5-bisphosphat... 0.15 OrthoFinder output from all 47 species
Sam_g36381 No alias small subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Smo147927 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Solyc02g063150.3.1 Solyc02g063150 small subunit of ribulose-1,5-bisphosphat... 0.18 OrthoFinder output from all 47 species
Solyc02g085950.4.1 Solyc02g085950 small subunit of ribulose-1,5-bisphosphat... 0.19 OrthoFinder output from all 47 species
Solyc03g034220.3.1 Solyc03g034220 small subunit of ribulose-1,5-bisphosphat... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009573 chloroplast ribulose bisphosphate carboxylase complex ISS Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0009637 response to blue light IEP Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010114 response to red light IEP Interproscan
BP GO:0010218 response to far red light IEP Interproscan
BP GO:0015977 carbon fixation ISS Interproscan
BP GO:0015979 photosynthesis IMP Interproscan
CC GO:0016020 membrane IDA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0048046 apoplast IDA Interproscan
BP GO:0080158 obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade IEP HCCA
BP GO:0002682 regulation of immune system process IEP HCCA
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006833 water transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009409 response to cold IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009543 chloroplast thylakoid lumen IEP HCCA
BP GO:0009595 detection of biotic stimulus IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009643 photosynthetic acclimation IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009696 salicylic acid metabolic process IEP HCCA
BP GO:0009697 salicylic acid biosynthetic process IEP HCCA
BP GO:0009743 response to carbohydrate IEP HCCA
BP GO:0009744 response to sucrose IEP HCCA
BP GO:0009750 response to fructose IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009773 photosynthetic electron transport in photosystem I IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009867 jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010037 response to carbon dioxide IEP HCCA
BP GO:0010119 regulation of stomatal movement IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP HCCA
CC GO:0010319 stromule IEP HCCA
BP GO:0010363 regulation of plant-type hypersensitive response IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015976 carbon utilization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
BP GO:0018958 phenol-containing compound metabolic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0031348 negative regulation of defense response IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0031977 thylakoid lumen IEP HCCA
CC GO:0031978 plastid thylakoid lumen IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
BP GO:0034285 response to disaccharide IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of monoatomic ion transmembrane transport IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042044 fluid transport IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042537 benzene-containing compound metabolic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042742 defense response to bacterium IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0043900 obsolete regulation of multi-organism process IEP HCCA
BP GO:0043903 regulation of biological process involved in symbiotic interaction IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0045088 regulation of innate immune response IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046189 phenol-containing compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0046688 response to copper ion IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048585 negative regulation of response to stimulus IEP HCCA
BP GO:0050776 regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055070 copper ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR024680 RuBisCO_ssu_N 2 42
IPR000894 RuBisCO_ssu_dom 67 175
No external refs found!