1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G28740

AT5G28740


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0005359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005359_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G28740
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Adi_g108555 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Aev_g05498 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Aob_g02364 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Aop_g01827 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Cba_g09535 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Ceric.09G080100.1 Ceric.09G080100 component *(SYF1/MAC9) of MAC spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Cre12.g513500 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
GSVIVT01006714001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.05 OrthoFinder output from all 47 species
Gb_19093 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g44970.1 LOC_Os07g44970 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Len_g30937 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.04 OrthoFinder output from all 47 species
MA_10437082g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10437082g0020 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Mp4g15330.1 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Ore_g17502 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Solyc01g086990.3.1 Solyc01g086990 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.1 OrthoFinder output from all 47 species
Spa_g14889 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.05 OrthoFinder output from all 47 species
Zm00001e010869_P001 Zm00001e010869 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Zm00001e035711_P001 Zm00001e035711 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000412 histone peptidyl-prolyl isomerization IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004821 histidine-tRNA ligase activity IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006427 histidyl-tRNA aminoacylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009934 regulation of meristem structural organization IEP HCCA
BP GO:0010026 trichome differentiation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0033186 CAF-1 complex IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!