AT5G26240 (CLC-D, ATCLC-D)

Aliases : CLC-D, ATCLC-D

Description : chloride channel D

Gene families : OG0000501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000501_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G26240
Cluster	HCCA: Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00103p00080940	CLC-D, ATCLC-D,...	Solute transport.carrier-mediated transport.CLC anion...	0.03	OrthoFinder output from all 47 species
Aop_g06086	ATCLC-C, CLC-C	anion channel / anion:proton antiporter *(CLC) &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021357.33	CLC-D, ATCLC-D	Chloride channel protein CLC-d OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre09.g402051	ATCLC-B, CLC-B	Chloride channel protein CLC-b OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre09.g404100	CLC-D, ATCLC-D	Solute transport.carrier-mediated transport.CLC anion...	0.02	OrthoFinder output from all 47 species
Cre13.g574000	CLC-D, ATCLC-D	Chloride channel protein CLC-c OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_06773	No alias	anion channel / anion:proton antiporter (CLC)	0.02	OrthoFinder output from all 47 species
LOC_Os03g48940.1	CLC-D, ATCLC-D,...	anion channel / anion:proton antiporter (CLC)	0.03	OrthoFinder output from all 47 species
Len_g39981	CLC-D, ATCLC-D	anion channel / anion:proton antiporter *(CLC) &...	0.02	OrthoFinder output from all 47 species
Lfl_g09124	CLC-D, ATCLC-D	anion channel / anion:proton antiporter *(CLC) &...	0.03	OrthoFinder output from all 47 species
Smo80232	CLC-D, ATCLC-D	Solute transport.carrier-mediated transport.CLC anion...	0.03	OrthoFinder output from all 47 species
Zm00001e005338_P001	CLC-D, ATCLC-D,...	anion channel / anion:proton antiporter (CLC)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
MF	GO:0005244	voltage-gated monoatomic ion channel activity	None	Extended
MF	GO:0005247	voltage-gated chloride channel activity	IGI	Interproscan
MF	GO:0005253	monoatomic anion channel activity	ISS	Interproscan
MF	GO:0005254	chloride channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IC	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007155	cell adhesion	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008308	voltage-gated monoatomic anion channel activity	None	Extended
MF	GO:0008509	monoatomic anion transmembrane transporter activity	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	IGI	Interproscan
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015103	inorganic anion transmembrane transporter activity	None	Extended
MF	GO:0015108	chloride transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022832	voltage-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000303	response to superoxide	IEP	HCCA
BP	GO:0000305	response to oxygen radical	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0000976	transcription cis-regulatory region binding	IEP	HCCA
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	HCCA
MF	GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	IEP	HCCA
MF	GO:0001046	core promoter sequence-specific DNA binding	IEP	HCCA
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	HCCA
MF	GO:0005217	intracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005221	intracellular cyclic nucleotide activated monoatomic cation channel activity	IEP	HCCA
MF	GO:0005223	intracellular cGMP-activated cation channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005262	calcium channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006282	regulation of DNA repair	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
MF	GO:0008240	tripeptidyl-peptidase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009636	response to toxic substance	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010019	chloroplast-nucleus signaling pathway	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019902	phosphatase binding	IEP	HCCA
MF	GO:0019903	protein phosphatase binding	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
MF	GO:0043855	cyclic nucleotide-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0045739	positive regulation of DNA repair	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0099094	ligand-gated monoatomic cation channel activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	HCCA
BP	GO:2001022	positive regulation of response to DNA damage stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000644	CBS_dom	705	751
IPR001807	Cl-channel_volt-gated	131	555

External Links

No external refs found!

AT5G26240 (CLC-D, ATCLC-D)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation