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  5. AT5G23310

AT5G23310 (FSD3)


Aliases : FSD3

Description : Fe superoxide dismutase 3


Gene families : OG0002805 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G23310
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00032580 FSD3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
Adi_g129201 FSD2 iron superoxide dismutase *(FSD) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21369 ATFSD1, FSD1 iron superoxide dismutase *(FSD) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g00902 ATFSD1, FSD1 cofactor of plastid-encoded RNA polymerase *(PAP9/FSD2)... 0.03 OrthoFinder output from all 47 species
Aop_g16309 FSD2 iron superoxide dismutase *(FSD) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0358.g066808 FSD2 iron superoxide dismutase *(FSD) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0495.g073583 ATFSD1, FSD1 iron superoxide dismutase *(FSD) & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g77404 FSD2 iron superoxide dismutase *(FSD) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42728 FSD2 iron superoxide dismutase *(FSD) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05303 ATFSD1, FSD1 iron superoxide dismutase *(FSD) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013850001 FSD2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 OrthoFinder output from all 47 species
GSVIVT01026137001 FSD3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 OrthoFinder output from all 47 species
Gb_28365 FSD3 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.09 OrthoFinder output from all 47 species
LOC_Os06g05110.1 FSD3, LOC_Os06g05110 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.03 OrthoFinder output from all 47 species
Len_g01062 ATFSD1, FSD1 cofactor of plastid-encoded RNA polymerase *(PAP9/FSD2)... 0.04 OrthoFinder output from all 47 species
MA_864356g0010 FSD3 Superoxide dismutase [Fe] 3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Nbi_g08907 FSD2 iron superoxide dismutase *(FSD) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04876 FSD2 cofactor of plastid-encoded RNA polymerase *(PAP9/FSD2)... 0.06 OrthoFinder output from all 47 species
Pp3c2_27440V3.1 FSD3, Pp3c2_27440 Fe superoxide dismutase 3 0.02 OrthoFinder output from all 47 species
Ppi_g11986 FSD2 iron superoxide dismutase *(FSD) & original description: none 0.03 OrthoFinder output from all 47 species
Smo91586 ATFSD1, FSD1 Redox homeostasis.enzymatic reactive oxygen species... 0.04 OrthoFinder output from all 47 species
Solyc02g021140.3.1 FSD3, Solyc02g021140 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.08 OrthoFinder output from all 47 species
Solyc03g095180.3.1 FSD2, Solyc03g095180 iron superoxide dismutase. PAP9/FSD2 cofactor of... 0.16 OrthoFinder output from all 47 species
Zm00001e029984_P001 FSD3, Zm00001e029984 iron superoxide dismutase. PAP4/FSD3 cofactor of... 0.01 OrthoFinder output from all 47 species
Zm00001e036663_P001 FSD2, Zm00001e036663 iron superoxide dismutase 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IDA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0019430 removal of superoxide radicals IC Interproscan
CC GO:0042644 chloroplast nucleoid IDA Interproscan
CC GO:0042646 plastid nucleoid IDA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004124 cysteine synthase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009501 amyloplast IEP HCCA
CC GO:0009508 plastid chromosome IEP HCCA
CC GO:0009509 chromoplast IEP HCCA
CC GO:0009513 etioplast IEP HCCA
CC GO:0009537 proplastid IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009643 photosynthetic acclimation IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009662 etioplast organization IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010239 chloroplast mRNA processing IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042780 tRNA 3'-end processing IEP HCCA
MF GO:0042781 3'-tRNA processing endoribonuclease activity IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0047134 protein-disulfide reductase (NAD(P)) activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090322 regulation of superoxide metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019831 Mn/Fe_SOD_N 50 135
IPR019832 Mn/Fe_SOD_C 142 244
No external refs found!