AT5G11300 (CYC3B, CYCA2;2, CYC2BAT)

Aliases : CYC3B, CYCA2;2, CYC2BAT

Description : mitotic-like cyclin 3B from Arabidopsis

Gene families : OG0001097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G11300
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AT1G80370	CYCA2;4	Cyclin A2;4	0.04	OrthoFinder output from all 47 species
Aev_g16144	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.02	OrthoFinder output from all 47 species
Azfi_s0003.g008079	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Cba_g13278	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.02	OrthoFinder output from all 47 species
Ceric.30G011000.1	CYCA1;1, Ceric.30G011000	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Ppi_g31211	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008053	CYC3B, CYCA2;2, CYC2BAT	regulatory protein *(CYCA) of cell cycle & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026906	CYCA1;1	regulatory protein *(CYCA) of cell cycle & original...	0.04	OrthoFinder output from all 47 species
Sam_g12489	No alias	regulatory protein *(TAM) involved in metaphase to...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0001558	regulation of cell growth	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008283	cell population proliferation	IGI	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IGI	Interproscan
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	ISS	Interproscan
MF	GO:0019207	kinase regulator activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019887	protein kinase regulator activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042023	DNA endoreduplication	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051302	regulation of cell division	RCA	Interproscan
BP	GO:0051510	regulation of unidimensional cell growth	RCA	Interproscan
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	ISS	Interproscan
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000038	regulation of stomatal complex development	None	Extended
BP	GO:2000123	positive regulation of stomatal complex development	IGI	Interproscan

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0001932	regulation of protein phosphorylation	IEP	HCCA
BP	GO:0001933	negative regulation of protein phosphorylation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003691	double-stranded telomeric DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004702	obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006469	negative regulation of protein kinase activity	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009554	megasporogenesis	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010058	regulation of atrichoblast fate specification	IEP	HCCA
BP	GO:0010059	positive regulation of atrichoblast fate specification	IEP	HCCA
BP	GO:0010061	regulation of trichoblast fate specification	IEP	HCCA
BP	GO:0010063	positive regulation of trichoblast fate specification	IEP	HCCA
BP	GO:0010071	root meristem specification	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
BP	GO:0010440	stomatal lineage progression	IEP	HCCA
BP	GO:0010453	regulation of cell fate commitment	IEP	HCCA
BP	GO:0010455	positive regulation of cell fate commitment	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0033673	negative regulation of kinase activity	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
MF	GO:0042162	telomeric DNA binding	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
BP	GO:0042326	negative regulation of phosphorylation	IEP	HCCA
BP	GO:0042659	regulation of cell fate specification	IEP	HCCA
BP	GO:0042660	positive regulation of cell fate specification	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
BP	GO:0043549	regulation of kinase activity	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0045597	positive regulation of cell differentiation	IEP	HCCA
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0045859	regulation of protein kinase activity	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051026	chiasma assembly	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051348	negative regulation of transferase activity	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0071901	negative regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1903890	positive regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	HCCA
BP	GO:2000067	regulation of root morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006671	Cyclin_N	175	301
IPR004367	Cyclin_C-dom	304	426

External Links

No external refs found!

AT5G11300 (CYC3B, CYCA2;2, CYC2BAT)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation