AT5G11240

Description : transducin family protein / WD-40 repeat family protein

Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G11240

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00144740	evm_27.TU.AmTr_v1...	No description available	0.05	OrthoFinder output from all 47 species
Aev_g13801	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g07852	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g47262	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0028.g024031	No alias	not classified & original description: CDS=168-2150	0.09	OrthoFinder output from all 47 species
Cba_g03965	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z072200.1	Ceric.1Z072200	not classified & original description: pacid=50586493...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000123.23	No alias	No description available	0.03	OrthoFinder output from all 47 species
Cre12.g538500	No alias	No description available	0.18	OrthoFinder output from all 47 species
Dcu_g09409	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01017246001	No alias	No description available	0.11	OrthoFinder output from all 47 species
GSVIVT01035079001	No alias	No description available	0.07	OrthoFinder output from all 47 species
Gb_29253	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
LOC_Os01g46060.1	LOC_Os01g46060	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species
LOC_Os03g18840.1	LOC_Os03g18840	no hits & (original description: none)	0.2	OrthoFinder output from all 47 species
LOC_Os12g43830.1	LOC_Os12g43830	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Mp5g00060.1	No alias	no hits & (original description: none)	0.13	OrthoFinder output from all 47 species
Msp_g11307	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17083	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g13559	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c7_70V3.1	Pp3c7_70	transducin family protein / WD-40 repeat family protein	0.03	OrthoFinder output from all 47 species
Sam_g36919	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Smo404454	No alias	No description available	0.07	OrthoFinder output from all 47 species
Solyc02g030080.4.1	Solyc02g030080	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc03g116380.4.1	Solyc03g116380	no hits & (original description: none)	0.18	OrthoFinder output from all 47 species
Tin_g02088	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e001372_P001	Zm00001e001372	no hits & (original description: none)	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISS	Interproscan
BP	GO:0000469	cleavage involved in rRNA processing	None	Extended
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	HCCA
BP	GO:0000957	mitochondrial RNA catabolic process	IEP	HCCA
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	HCCA
BP	GO:0000963	mitochondrial RNA processing	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0004407	histone deacetylase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004532	exoribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004654	polyribonucleotide nucleotidyltransferase activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009561	megagametogenesis	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010467	gene expression	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0033558	protein lysine deacetylase activity	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048825	cotyledon development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0090069	regulation of ribosome biogenesis	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0140053	mitochondrial gene expression	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000232	regulation of rRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007148	SSU_processome_Utp12	465	556
IPR001680	WD40_repeat	189	226

External Links

No external refs found!

AT5G11240

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation