AT5G08330

Description : TCP family transcription factor

Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G08330
Cluster	HCCA: Cluster_106

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00171910	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.TCP...	0.11	OrthoFinder output from all 47 species
AT1G69690	No alias	TCP family transcription factor	0.03	OrthoFinder output from all 47 species
AT2G45680	No alias	TCP family transcription factor	0.09	OrthoFinder output from all 47 species
AT3G27010	AT-TCP20, TCP20,...	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family...	0.03	OrthoFinder output from all 47 species
AT3G45150	TCP16	TCP domain protein 16	0.04	OrthoFinder output from all 47 species
Adi_g060147	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g069116	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65051.t1	AT-TCP20, TCP20,...	circadian clock activation factor *(TCP20) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0013.g013244	No alias	TCP-type transcription factor & original description: CDS=1-1674	0.03	OrthoFinder output from all 47 species
Cba_g15454	No alias	TCP-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.12G053600.1	AtTCP14, TCP14,...	TCP-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.16G003700.1	AtTCP14, TCP14,...	TCP-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dde_g01691	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07691	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01023283001	No alias	RNA biosynthesis.transcriptional activation.TCP...	0.04	OrthoFinder output from all 47 species
LOC_Os02g42380.1	LOC_Os02g42380	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
LOC_Os08g43160.1	LOC_Os08g43160	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
LOC_Os11g07460.1	LOC_Os11g07460	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
MA_16752g0010	No alias	transcription factor (TCP)	0.06	OrthoFinder output from all 47 species
MA_16752g0020	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_81710g0010	No alias	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
Nbi_g05851	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo438214	No alias	RNA biosynthesis.transcriptional activation.TCP...	0.03	OrthoFinder output from all 47 species
Smo441321	No alias	RNA biosynthesis.transcriptional activation.TCP...	0.05	OrthoFinder output from all 47 species
Solyc03g006800.1.1	Solyc03g006800	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Zm00001e003744_P001	Zm00001e003744	transcription factor (TCP)	0.05	OrthoFinder output from all 47 species
Zm00001e023066_P001	Zm00001e023066	transcription factor (TCP). CHE circadian clock repression factor	0.05	OrthoFinder output from all 47 species
Zm00001e039492_P001	Zm00001e039492	transcription factor (TCP)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042752	regulation of circadian rhythm	IMP	Interproscan
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IMP	Interproscan
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051090	regulation of DNA-binding transcription factor activity	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	31	107

External Links

No external refs found!

AT5G08330

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation