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  5. AT4G39620

AT4G39620 (EMB2453, ATPPR5)


Aliases : EMB2453, ATPPR5

Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G39620

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0174.g055903 EMB2453, ATPPR5 not classified & original description: CDS=133-1563 0.04 OrthoFinder output from all 47 species
Dcu_g01190 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017677001 EMB2750 Pentatricopeptide repeat-containing protein At3g06430,... 0.07 OrthoFinder output from all 47 species
GSVIVT01022204001 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.04 OrthoFinder output from all 47 species
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.08 OrthoFinder output from all 47 species
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.06 OrthoFinder output from all 47 species
Gb_36199 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.11 OrthoFinder output from all 47 species
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 OrthoFinder output from all 47 species
LOC_Os02g51480.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.03 OrthoFinder output from all 47 species
LOC_Os03g02430.1 LOC_Os03g02430 Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
LOC_Os03g19650.3 EMB2750, LOC_Os03g19650 Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
Nbi_g07398 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16720 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11535 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075 No alias not classified & original description: CDS=33-1412 0.06 OrthoFinder output from all 47 species
Sam_g13579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g006500.4.1 Solyc01g006500 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Solyc01g057200.4.1 EMB2750, Solyc01g057200 Pentatricopeptide repeat-containing protein At3g06430,... 0.11 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.15 OrthoFinder output from all 47 species
Solyc08g045780.4.1 Solyc08g045780 Pentatricopeptide repeat-containing protein At3g53170... 0.06 OrthoFinder output from all 47 species
Solyc12g098990.2.1 EMB2750, Solyc12g098990 Pentatricopeptide repeat-containing protein At3g06430,... 0.09 OrthoFinder output from all 47 species
Spa_g12418 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000106_P001 Zm00001e000106 Pentatricopeptide repeat-containing protein At3g53170... 0.02 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.08 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.07 OrthoFinder output from all 47 species
Zm00001e032726_P001 EMB2750, Zm00001e032726 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
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Type GO Term Name Evidence Source
MF GO:0002094 polyprenyltransferase activity IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009508 plastid chromosome IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010236 plastoquinone biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042371 vitamin K biosynthetic process IEP HCCA
BP GO:0042372 phylloquinone biosynthetic process IEP HCCA
BP GO:0042373 vitamin K metabolic process IEP HCCA
BP GO:0042374 phylloquinone metabolic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042550 photosystem I stabilization IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046428 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 131 177
IPR002885 Pentatricopeptide_repeat 206 253
IPR002885 Pentatricopeptide_repeat 315 342
IPR002885 Pentatricopeptide_repeat 385 407
IPR002885 Pentatricopeptide_repeat 349 374
IPR002885 Pentatricopeptide_repeat 279 306
No external refs found!