AT4G34910


Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein


Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G34910

Target Alias Description ECC score Gene Family Method Actions
Ala_g07757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0551.g076593 No alias not classified & original description: CDS=64-1935 0.03 OrthoFinder output from all 47 species
Ceric.24G071500.1 Ceric.24G071500 not classified & original description: pacid=50629253... 0.06 OrthoFinder output from all 47 species
Cre12.g526850 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.13 OrthoFinder output from all 47 species
Gb_38528 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os03g51900.1 LOC_Os03g51900 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species
MA_71366g0010 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp7g04610.1 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species
Sam_g29793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo440996 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc02g070100.3.1 Solyc02g070100 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.15 OrthoFinder output from all 47 species
Tin_g40380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012111_P001 Zm00001e012111 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006606 protein import into nucleus RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003963 RNA-3'-phosphate cyclase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010311 lateral root formation IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016273 arginine N-methyltransferase activity IEP HCCA
MF GO:0016274 protein-arginine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090069 regulation of ribosome biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000232 regulation of rRNA processing IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 70 248
IPR001650 Helicase_C 286 431
No external refs found!