AT4G34670

Description : Ribosomal protein S3Ae

Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G34670

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00271660	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.28	OrthoFinder output from all 47 species
AMTR_s00026p00042160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	OrthoFinder output from all 47 species
Adi_g060842	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g060843	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Adi_g098383	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g124961	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g00907	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Ala_g38346	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Als_g18676	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g25256	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g07768	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g05100	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Aop_g20489	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Aspi01Gene36093.t1	Aspi01Gene36093	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0087.g042272	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Azfi_s0171.g055692	No alias	not classified & original description: CDS=106-348	0.04	OrthoFinder output from all 47 species
Azfi_s0825.g088224	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Cba_g09637	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g21209	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g69205	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ceric.10G049700.1	Ceric.10G049700	component *(eS1) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Ceric.32G043000.1	Ceric.32G043000	component *(eS1) of small ribosomal-subunit (SSU)...	0.29	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020710.39	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
Cre13.g568650	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder output from all 47 species
Dac_g13329	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Dac_g26683	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g29549	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Dcu_g40359	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Dde_g00448	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ehy_g18202	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01018024001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01021836001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
Gb_02289	No alias	component RPS3a of SSU proteome	0.19	OrthoFinder output from all 47 species
LOC_Os02g18550.1	LOC_Os02g18550	component RPS3a of SSU proteome	0.2	OrthoFinder output from all 47 species
LOC_Os03g10340.1	LOC_Os03g10340	component RPS3a of SSU proteome	0.29	OrthoFinder output from all 47 species
LOC_Os12g21798.1	LOC_Os12g21798	component RPS3a of SSU proteome	0.24	OrthoFinder output from all 47 species
Len_g11985	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Len_g17686	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g26102	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_124901g0010	No alias	component RPS3a of SSU proteome	0.14	OrthoFinder output from all 47 species
MA_31004g0010	No alias	component RPS3a of SSU proteome	0.29	OrthoFinder output from all 47 species
Mp6g02810.1	No alias	component RPS3a of SSU proteome	0.34	OrthoFinder output from all 47 species
Msp_g05152	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Nbi_g15011	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ore_g03374	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ore_g35644	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ore_g35645	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g08122	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g15097	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pir_g60403	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Pp3c11_17260V3.1	Pp3c11_17260	Ribosomal protein S3Ae	0.08	OrthoFinder output from all 47 species
Pp3c22_18300V3.1	Pp3c22_18300	Ribosomal protein S3Ae	0.11	OrthoFinder output from all 47 species
Ppi_g08695	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g17698	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g25805	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g27302	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025749	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Sam_g06811	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Sam_g07668	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Sam_g07669	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.22	OrthoFinder output from all 47 species
Sam_g14495	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g30070	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Smo160008	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Smo271906	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Smo271907	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Solyc03g097900.3.1	Solyc03g097900	component RPS3a of SSU proteome	0.24	OrthoFinder output from all 47 species
Solyc06g072490.3.1	Solyc06g072490	component RPS3a of SSU proteome	0.33	OrthoFinder output from all 47 species
Solyc09g082520.3.1	Solyc09g082520	component RPS3a of SSU proteome	0.08	OrthoFinder output from all 47 species
Spa_g05776	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Tin_g01747	No alias	component *(eS1) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Zm00001e038777_P001	Zm00001e038777	component RPS3a of SSU proteome	0.25	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090069	regulation of ribosome biogenesis	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:2000232	regulation of rRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001593	Ribosomal_S3Ae	15	221

External Links

No external refs found!

AT4G34670

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation