AT4G24560 (UBP16)

Aliases : UBP16

Description : ubiquitin-specific protease 16

Gene families : OG0000320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000320_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G24560

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00135p00021060	UBP16,...	Protein degradation.peptidase families.cysteine-type...	0.05	OrthoFinder output from all 47 species
Adi_g013898	UBP25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060737	UBP23	deubiquitinase *(UBP23) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g069165	UBP23	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g077157	UBP18	deubiquitinase *(UBP15-21) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g27664	UBP25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14073	UBP23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g19936	UBP25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32497	UBP18	deubiquitinase *(UBP15-21) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene00561.t1	UBP25, Aspi01Gene00561	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.15G035800.1	UBP19, Ceric.15G035800	deubiquitinase *(UBP15-21) & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.22G015900.1	UBP25, Ceric.22G015900	not classified & original description: pacid=50613832...	0.04	OrthoFinder output from all 47 species
Dac_g01006	UBP25	deubiquitinase *(UBP25) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g09670	UBP25	deubiquitinase *(UBP25) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g31799	UBP19	deubiquitinase *(UBP15-21) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01000696001	UBP15	Protein degradation.peptidase families.cysteine-type...	0.05	OrthoFinder output from all 47 species
GSVIVT01001911001	No alias	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01001912001	UBP23	Protein degradation.peptidase families.cysteine-type...	0.05	OrthoFinder output from all 47 species
GSVIVT01009158001	UBP16	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
GSVIVT01033166001	UBP18	Protein degradation.peptidase families.cysteine-type...	0.05	OrthoFinder output from all 47 species
GSVIVT01038082001	UBP25	Protein degradation.peptidase families.cysteine-type...	0.05	OrthoFinder output from all 47 species
LOC_Os02g14730.1	UBP15, LOC_Os02g14730	deubiquitinase (UBP15-21)	0.03	OrthoFinder output from all 47 species
LOC_Os06g44380.1	UBP19, LOC_Os06g44380	deubiquitinase (UBP15-21)	0.08	OrthoFinder output from all 47 species
LOC_Os09g28940.1	UBP17, LOC_Os09g28940	deubiquitinase (UBP15-21)	0.03	OrthoFinder output from all 47 species
Len_g45877	UBP23	deubiquitinase *(UBP23) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g11163	UBP25	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10429414g0020	UBP18	deubiquitinase (UBP15-21)	0.05	OrthoFinder output from all 47 species
Mp1g03220.1	UBP25	Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp2g05560.1	UBP18	deubiquitinase (UBP15-21)	0.04	OrthoFinder output from all 47 species
Ore_g29641	UBP25	deubiquitinase *(UBP25) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g24151	UBP19	deubiquitinase *(UBP15-21) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g20105	UBP19	deubiquitinase *(UBP15-21) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05909	UBP23	deubiquitinase *(UBP23) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g04367	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g12044	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc08g069050.3.1	UBP19, Solyc08g069050	deubiquitinase (UBP15-21)	0.04	OrthoFinder output from all 47 species
Spa_g12821	UBP25	deubiquitinase *(UBP25) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26124	UBP23	deubiquitinase *(UBP23) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e014332_P001	UBP15, Zm00001e014332	deubiquitinase (UBP15-21)	0.03	OrthoFinder output from all 47 species
Zm00001e022516_P001	UBP17, Zm00001e022516	deubiquitinase (UBP15-21)	0.03	OrthoFinder output from all 47 species
Zm00001e024878_P003	UBP15, Zm00001e024878	deubiquitinase (UBP15-21)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006487	protein N-linked glycosylation	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0008283	cell population proliferation	IGI	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009908	flower development	IGI	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016579	protein deubiquitination	IDA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0047484	regulation of response to osmotic stress	None	Extended
BP	GO:0048364	root development	IGI	Interproscan
BP	GO:0048366	leaf development	IGI	Interproscan
BP	GO:0048367	shoot system development	IGI	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901000	regulation of response to salt stress	IMP	Interproscan
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
CC	GO:0000145	exocyst	IEP	HCCA
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090342	obsolete regulation of cell aging	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA
BP	GO:2000023	regulation of lateral root development	IEP	HCCA
BP	GO:2000069	regulation of post-embryonic root development	IEP	HCCA
BP	GO:2000280	regulation of root development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	542	844
IPR002893	Znf_MYND	74	111

External Links

No external refs found!

AT4G24560 (UBP16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation