Aliases : PSRP5
Description : plastid-specific 50S ribosomal protein 5
Gene families : OG0007652 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007652_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT3G56910 | |
Cluster | HCCA: Cluster_81 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00039p00213540 | PSRP5,... | Protein biosynthesis.organelle translation... | 0.09 | OrthoFinder output from all 47 species | |
Adi_g102108 | No alias | component *(cL37) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g17766 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g35452 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g20889 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.14 | OrthoFinder output from all 47 species | |
Als_g21728 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.12 | OrthoFinder output from all 47 species | |
Aob_g03750 | No alias | component *(cL37) of large plastid ribosomal-subunit... | 0.08 | OrthoFinder output from all 47 species | |
Aop_g02433 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene56363.t1 | Aspi01Gene56363 | component *(cL37) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0004.g008656 | No alias | component *(cL37) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Cba_g30507 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.06G029200.1 | Ceric.06G029200 | component *(cL37) of large plastid ribosomal-subunit... | 0.15 | OrthoFinder output from all 47 species | |
Dac_g01920 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g12621 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Ehy_g01939 | No alias | component *(cL37) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Ehy_g31082 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01025849001 | PSRP5 | Protein biosynthesis.organelle translation... | 0.17 | OrthoFinder output from all 47 species | |
LOC_Os01g17150.1 | PSRP5, LOC_Os01g17150 | component psPSRP5 of large ribosomal subunit proteome | 0.28 | OrthoFinder output from all 47 species | |
Len_g02486 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Lfl_g10082 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
MA_317435g0010 | PSRP5 | component psPSRP5 of large ribosomal subunit proteome | 0.14 | OrthoFinder output from all 47 species | |
Mp6g16600.1 | PSRP5 | component psPSRP5 of large ribosomal subunit proteome | 0.34 | OrthoFinder output from all 47 species | |
Msp_g01322 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.08 | OrthoFinder output from all 47 species | |
Nbi_g17871 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Ore_g28770 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Pp3c5_5090V3.1 | Pp3c5_5090 | No annotation | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0019.g007874 | No alias | component *(cL37) of large plastid ribosomal-subunit... | 0.14 | OrthoFinder output from all 47 species | |
Sam_g06595 | No alias | component *(cL37) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Solyc10g081100.3.1 | PSRP5, Solyc10g081100 | component psPSRP5 of large ribosomal subunit proteome | 0.28 | OrthoFinder output from all 47 species | |
Spa_g46739 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.13 | OrthoFinder output from all 47 species | |
Tin_g12594 | PSRP5 | component *(cL37) of large plastid ribosomal-subunit... | 0.12 | OrthoFinder output from all 47 species | |
Zm00001e017391_P001 | PSRP5, Zm00001e017391 | component psPSRP5 of large ribosomal subunit proteome | 0.15 | OrthoFinder output from all 47 species | |
Zm00001e025476_P001 | PSRP5, Zm00001e025476 | component psPSRP5 of large ribosomal subunit proteome | 0.17 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
CC | GO:0009507 | chloroplast | IDA | Interproscan |
CC | GO:0009507 | chloroplast | ISM | Interproscan |
CC | GO:0009535 | chloroplast thylakoid membrane | IDA | Interproscan |
CC | GO:0009579 | thylakoid | IDA | Interproscan |
CC | GO:0009941 | chloroplast envelope | IDA | Interproscan |
BP | GO:0032544 | plastid translation | IMP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000096 | sulfur amino acid metabolic process | IEP | HCCA |
BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | HCCA |
CC | GO:0000311 | plastid large ribosomal subunit | IEP | HCCA |
CC | GO:0000313 | organellar ribosome | IEP | HCCA |
CC | GO:0000315 | organellar large ribosomal subunit | IEP | HCCA |
BP | GO:0003006 | developmental process involved in reproduction | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003727 | single-stranded RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
MF | GO:0004550 | nucleoside diphosphate kinase activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0006098 | pentose-phosphate shunt | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
BP | GO:0006534 | cysteine metabolic process | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006629 | lipid metabolic process | IEP | HCCA |
BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
BP | GO:0006655 | phosphatidylglycerol biosynthetic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006739 | NADP metabolic process | IEP | HCCA |
BP | GO:0006740 | NADPH regeneration | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0007275 | multicellular organism development | IEP | HCCA |
BP | GO:0007602 | phototransduction | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008187 | poly-pyrimidine tract binding | IEP | HCCA |
MF | GO:0008266 | poly(U) RNA binding | IEP | HCCA |
BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
BP | GO:0009069 | serine family amino acid metabolic process | IEP | HCCA |
BP | GO:0009070 | serine family amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | HCCA |
CC | GO:0009532 | plastid stroma | IEP | HCCA |
CC | GO:0009547 | plastid ribosome | IEP | HCCA |
CC | GO:0009570 | chloroplast stroma | IEP | HCCA |
BP | GO:0009581 | detection of external stimulus | IEP | HCCA |
BP | GO:0009582 | detection of abiotic stimulus | IEP | HCCA |
BP | GO:0009583 | detection of light stimulus | IEP | HCCA |
BP | GO:0009585 | red, far-red light phototransduction | IEP | HCCA |
BP | GO:0009653 | anatomical structure morphogenesis | IEP | HCCA |
BP | GO:0009658 | chloroplast organization | IEP | HCCA |
BP | GO:0009668 | plastid membrane organization | IEP | HCCA |
BP | GO:0009719 | response to endogenous stimulus | IEP | HCCA |
BP | GO:0009725 | response to hormone | IEP | HCCA |
BP | GO:0009734 | auxin-activated signaling pathway | IEP | HCCA |
BP | GO:0009735 | response to cytokinin | IEP | HCCA |
BP | GO:0009767 | photosynthetic electron transport chain | IEP | HCCA |
BP | GO:0009773 | photosynthetic electron transport in photosystem I | IEP | HCCA |
BP | GO:0009790 | embryo development | IEP | HCCA |
BP | GO:0009793 | embryo development ending in seed dormancy | IEP | HCCA |
BP | GO:0009902 | chloroplast relocation | IEP | HCCA |
BP | GO:0010027 | thylakoid membrane organization | IEP | HCCA |
BP | GO:0010103 | stomatal complex morphogenesis | IEP | HCCA |
BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
BP | GO:0015994 | chlorophyll metabolic process | IEP | HCCA |
BP | GO:0015995 | chlorophyll biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | HCCA |
BP | GO:0019220 | regulation of phosphate metabolic process | IEP | HCCA |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | HCCA |
BP | GO:0019344 | cysteine biosynthetic process | IEP | HCCA |
BP | GO:0019362 | pyridine nucleotide metabolic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | HCCA |
BP | GO:0019750 | chloroplast localization | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
CC | GO:0022625 | cytosolic large ribosomal subunit | IEP | HCCA |
CC | GO:0022626 | cytosolic ribosome | IEP | HCCA |
BP | GO:0022900 | electron transport chain | IEP | HCCA |
BP | GO:0031399 | regulation of protein modification process | IEP | HCCA |
BP | GO:0032501 | multicellular organismal process | IEP | HCCA |
BP | GO:0032502 | developmental process | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0035303 | regulation of dephosphorylation | IEP | HCCA |
BP | GO:0035304 | regulation of protein dephosphorylation | IEP | HCCA |
BP | GO:0042221 | response to chemical | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0042440 | pigment metabolic process | IEP | HCCA |
BP | GO:0042793 | plastid transcription | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
BP | GO:0045017 | glycerolipid biosynthetic process | IEP | HCCA |
BP | GO:0045036 | protein targeting to chloroplast | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046148 | pigment biosynthetic process | IEP | HCCA |
BP | GO:0046471 | phosphatidylglycerol metabolic process | IEP | HCCA |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | HCCA |
BP | GO:0046496 | nicotinamide nucleotide metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048856 | anatomical structure development | IEP | HCCA |
BP | GO:0051156 | glucose 6-phosphate metabolic process | IEP | HCCA |
BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051246 | regulation of protein metabolic process | IEP | HCCA |
BP | GO:0051640 | organelle localization | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051644 | plastid localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0051656 | establishment of organelle localization | IEP | HCCA |
BP | GO:0051667 | establishment of plastid localization | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
BP | GO:0061024 | membrane organization | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072524 | pyridine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072596 | establishment of protein localization to chloroplast | IEP | HCCA |
BP | GO:0072598 | protein localization to chloroplast | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0090391 | granum assembly | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:0090626 | plant epidermis morphogenesis | IEP | HCCA |
BP | GO:0090698 | post-embryonic plant morphogenesis | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
BP | GO:1905392 | plant organ morphogenesis | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |