AT3G44890 (RPL9)


Aliases : RPL9

Description : ribosomal protein L9


Gene families : OG0005681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005681_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G44890
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00103640 RPL9,... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Aev_g02007 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ala_g14560 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Als_g00418 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g29870 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g01961 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Azfi_s0116.g046443 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Cba_g11053 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.04G054000.1 RPL9, Ceric.04G054000 component *(bL9c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ceric.04G054200.1 RPL9, Ceric.04G054200 component *(bL9c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Cre12.g556050 No alias Protein biosynthesis.organelle translation... 0.21 OrthoFinder output from all 47 species
Dac_g04533 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g00712 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g02133 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
GSVIVT01031460001 RPL9 Protein biosynthesis.organelle translation... 0.28 OrthoFinder output from all 47 species
Gb_34312 RPL9 component psRPL9 of large ribosomal subunit proteome 0.15 OrthoFinder output from all 47 species
LOC_Os02g57670.1 RPL9, LOC_Os02g57670 component psRPL9 of large ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Len_g18180 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Lfl_g00811 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
MA_810522g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_8767694g0010 RPL9 component psRPL9 of large ribosomal subunit proteome 0.18 OrthoFinder output from all 47 species
Mp1g05730.1 RPL9 component psRPL9 of large ribosomal subunit proteome 0.33 OrthoFinder output from all 47 species
Msp_g21781 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g27085 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ore_g16241 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pnu_g10443 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c1_5300V3.1 RPL9, Pp3c1_5300 ribosomal protein L9 0.05 OrthoFinder output from all 47 species
Pp3c1_5320V3.1 RPL9, Pp3c1_5320 ribosomal protein L9 0.02 OrthoFinder output from all 47 species
Pp3c2_34110V3.1 RPL9, Pp3c2_34110 ribosomal protein L9 0.04 OrthoFinder output from all 47 species
Pp3c2_34120V3.1 RPL9, Pp3c2_34120 ribosomal protein L9 0.04 OrthoFinder output from all 47 species
Ppi_g00398 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008686 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Sam_g30436 No alias component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g39483 No alias component *(bL9c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Smo270732 RPL9 Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Solyc11g066410.2.1 RPL9, Solyc11g066410 component psRPL9 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Spa_g05781 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Spa_g26242 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Tin_g00502 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Zm00001e016155_P002 RPL9, Zm00001e016155 component psRPL9 of large ribosomal subunit proteome 0.23 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000311 plastid large ribosomal subunit TAS Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006412 translation TAS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004550 nucleoside diphosphate kinase activity IEP HCCA
BP GO:0005982 starch metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006458 'de novo' protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009106 lipoate metabolic process IEP HCCA
BP GO:0009108 obsolete coenzyme biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009409 response to cold IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009773 photosynthetic electron transport in photosystem I IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
CC GO:0010319 stromule IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0016869 intramolecular transferase activity, transferring amino groups IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032544 plastid translation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
MF GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042742 defense response to bacterium IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051084 'de novo' post-translational protein folding IEP HCCA
BP GO:0051085 chaperone cofactor-dependent protein refolding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061077 chaperone-mediated protein folding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR020070 Ribosomal_L9_N 51 96
IPR020069 Ribosomal_L9_C 112 194
No external refs found!