AT3G24495 (MSH7, ATMSH7, MSH6-2)


Aliases : MSH7, ATMSH7, MSH6-2

Description : MUTS homolog 7


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G24495
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242090 MSH7, ATMSH7,... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.21 OrthoFinder output from all 47 species
AMTR_s00022p00172100 MSH7, ATMSH7,... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00191830 MSH7, ATMSH7,... DNA damage response.DNA repair mechanisms.mismatch... 0.11 OrthoFinder output from all 47 species
Als_g31978 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g014037 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.11 OrthoFinder output from all 47 species
Azfi_s0368.g067032 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000489.16 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre05.g235750 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Dac_g23796 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Dcu_g46455 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
GSVIVT01015407001 MSH7, ATMSH7, MSH6-2 DNA damage response.DNA repair mechanisms.mismatch... 0.14 OrthoFinder output from all 47 species
Gb_18995 MSH7, ATMSH7, MSH6-2 DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_18996 MSH7, ATMSH7, MSH6-2 DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g08540.1 MSH7, ATMSH7,... component MSH7 of MSH2-x mismatch repair heterodimers 0.05 OrthoFinder output from all 47 species
LOC_Os09g24220.1 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.08 OrthoFinder output from all 47 species
Len_g08764 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
MA_214705g0010 MSH7, ATMSH7, MSH6-2 DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp2g14640.1 MSH6-1, ATMSH6, MSH6 component MSH6 of MSH2-x mismatch repair heterodimers 0.03 OrthoFinder output from all 47 species
Mp7g16850.1 MSH7, ATMSH7, MSH6-2 component MSH7 of MSH2-x mismatch repair heterodimers 0.15 OrthoFinder output from all 47 species
Sam_g16226 No alias component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Solyc01g079520.3.1 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.14 OrthoFinder output from all 47 species
Tin_g08443 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
Zm00001e016678_P004 MSH7, ATMSH7,... component MSH7 of MSH2-x mismatch repair heterodimers 0.17 OrthoFinder output from all 47 species
Zm00001e034087_P001 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IBA Interproscan
MF GO:0000400 four-way junction DNA binding IBA Interproscan
BP GO:0000710 meiotic mismatch repair IBA Interproscan
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
MF GO:0003684 damaged DNA binding ISS Interproscan
MF GO:0003684 damaged DNA binding IBA Interproscan
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006298 mismatch repair ISS Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0007129 homologous chromosome pairing at meiosis RCA Interproscan
BP GO:0007131 reciprocal meiotic recombination IBA Interproscan
BP GO:0007131 reciprocal meiotic recombination RCA Interproscan
MF GO:0008094 ATP-dependent activity, acting on DNA IBA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
BP GO:0009411 response to UV IBA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle RCA Interproscan
BP GO:0010564 regulation of cell cycle process RCA Interproscan
BP GO:0016458 obsolete gene silencing RCA Interproscan
MF GO:0032137 guanine/thymine mispair binding IBA Interproscan
MF GO:0032138 single base insertion or deletion binding IBA Interproscan
CC GO:0032301 MutSalpha complex IBA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0043570 maintenance of DNA repeat elements IBA Interproscan
BP GO:0045910 negative regulation of DNA recombination IBA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000712 resolution of meiotic recombination intermediates IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000795 synaptonemal complex IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
BP GO:0000819 sister chromatid segregation IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006279 premeiotic DNA replication IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme-linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009934 regulation of meristem structural organization IEP HCCA
BP GO:0009957 epidermal cell fate specification IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0031261 DNA replication preinitiation complex IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032411 positive regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0032414 positive regulation of ion transmembrane transporter activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033260 nuclear DNA replication IEP HCCA
BP GO:0034764 positive regulation of transmembrane transport IEP HCCA
BP GO:0034767 positive regulation of monoatomic ion transmembrane transport IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042631 cellular response to water deprivation IEP HCCA
BP GO:0043270 positive regulation of monoatomic ion transport IEP HCCA
BP GO:0044070 regulation of monoatomic anion transport IEP HCCA
BP GO:0044774 mitotic DNA integrity checkpoint signaling IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045930 negative regulation of mitotic cell cycle IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051050 positive regulation of transport IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071229 cellular response to acid chemical IEP HCCA
BP GO:0071462 cellular response to water stimulus IEP HCCA
BP GO:0071588 hydrogen peroxide mediated signaling pathway IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement IEP HCCA
BP GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement IEP HCCA
BP GO:1901529 positive regulation of anion channel activity IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:1903793 positive regulation of monoatomic anion transport IEP HCCA
BP GO:1903959 regulation of monoatomic anion transmembrane transport IEP HCCA
BP GO:1903961 positive regulation of anion transmembrane transport IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 558 776
IPR007695 DNA_mismatch_repair_MutS-lik_N 270 380
IPR007860 DNA_mmatch_repair_MutS_con_dom 390 540
IPR000432 DNA_mismatch_repair_MutS_C 850 1045
No external refs found!