AT3G13300 (VCS)

Aliases : VCS

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00131900	VCS,...	RNA processing.RNA decay.deadenylation-dependent...	0.07	OrthoFinder output from all 47 species
Adi_g055830	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.08	OrthoFinder output from all 47 species
Aev_g04893	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.1	OrthoFinder output from all 47 species
Ala_g11471	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Ala_g13274	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.07	OrthoFinder output from all 47 species
Als_g15285	VCS	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g63425	VCR	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Aob_g03608	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Aob_g04505	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.03	OrthoFinder output from all 47 species
Aop_g07559	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.02	OrthoFinder output from all 47 species
Aop_g08777	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene58199.t1	VCR, Aspi01Gene58199	scaffold component *(VCS) of mRNA decapping complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0049.g030776	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Cba_g04739	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.02	OrthoFinder output from all 47 species
Cba_g14873	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.02	OrthoFinder output from all 47 species
Cba_g27245	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.06	OrthoFinder output from all 47 species
Ceric.06G068900.1	VCS, Ceric.06G068900	scaffold component *(VCS) of mRNA decapping complex &...	0.07	OrthoFinder output from all 47 species
Ceric.33G025800.1	VCS, Ceric.33G025800	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001038.27	VCS	Varicose-related protein OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre12.g553100	VCR	Varicose-related protein OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g05835	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g11716	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.11	OrthoFinder output from all 47 species
GSVIVT01006976001	VCS	RNA processing.RNA decay.deadenylation-dependent...	0.05	OrthoFinder output from all 47 species
GSVIVT01014783001	VCS	RNA processing.RNA decay.deadenylation-dependent...	0.11	OrthoFinder output from all 47 species
Gb_04906	VCS	scaffold component VCS of mRNA decapping complex	0.14	OrthoFinder output from all 47 species
Gb_29283	VCS	Enhancer of mRNA-decapping protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os06g19660.1	VCS, LOC_Os06g19660	scaffold component VCS of mRNA decapping complex	0.1	OrthoFinder output from all 47 species
Len_g08328	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.05	OrthoFinder output from all 47 species
Len_g25353	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.02	OrthoFinder output from all 47 species
Lfl_g18274	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.09	OrthoFinder output from all 47 species
MA_10431534g0010	VCR	Varicose-related protein OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
MA_10431534g0020	VCS	Enhancer of mRNA-decapping protein 4 OS=Arabidopsis...	0.1	OrthoFinder output from all 47 species
MA_10431534g0030	VCS	scaffold component VCS of mRNA decapping complex	0.09	OrthoFinder output from all 47 species
MA_39123g0010	VCS	Enhancer of mRNA-decapping protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp3g11710.1	VCS	scaffold component VCS of mRNA decapping complex	0.08	OrthoFinder output from all 47 species
Msp_g14526	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.06	OrthoFinder output from all 47 species
Msp_g26178	VCR	scaffold component *(VCS) of mRNA decapping complex &...	0.06	OrthoFinder output from all 47 species
Nbi_g01496	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Nbi_g03858	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Ore_g09332	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.09	OrthoFinder output from all 47 species
Ore_g36602	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.08	OrthoFinder output from all 47 species
Pir_g02589	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.02	OrthoFinder output from all 47 species
Pir_g25441	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g03283	VCS	scaffold component *(VCS) of mRNA decaPping complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g10110	VCS	scaffold component *(VCS) of mRNA decaPping complex &...	0.06	OrthoFinder output from all 47 species
Sam_g16345	No alias	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Sam_g51656	No alias	scaffold component *(VCS) of mRNA decapping complex &...	0.02	OrthoFinder output from all 47 species
Solyc07g065950.4.1	VCS, Solyc07g065950	scaffold component VCS of mRNA decapping complex	0.09	OrthoFinder output from all 47 species
Solyc10g005920.4.1	VCS, Solyc10g005920	scaffold component VCS of mRNA decapping complex	0.07	OrthoFinder output from all 47 species
Spa_g07074	VCR	scaffold component *(VCS) of mRNA decapping complex &...	0.04	OrthoFinder output from all 47 species
Spa_g17551	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.05	OrthoFinder output from all 47 species
Spa_g37076	VCR	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g24736	VCS	scaffold component *(VCS) of mRNA decapping complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e015689_P001	VCS, Zm00001e015689	scaffold component VCS of mRNA decapping complex	0.11	OrthoFinder output from all 47 species
Zm00001e023399_P003	VCS, Zm00001e023399	scaffold component VCS of mRNA decapping complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISS	Interproscan
CC	GO:0000932	P-body	IDA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	IMP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	None	Extended
BP	GO:0009791	post-embryonic development	IMP	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010071	root meristem specification	IMP	Interproscan
BP	GO:0010072	primary shoot apical meristem specification	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IDA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032870	cellular response to hormone stimulus	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IPI	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071365	cellular response to auxin stimulus	IMP	Interproscan
BP	GO:0071495	cellular response to endogenous stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090421	embryonic meristem initiation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
BP	GO:0110154	RNA decapping	None	Extended
BP	GO:0110156	methylguanosine-cap decapping	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000059	obsolete protein import into nucleus, docking	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0000919	cell plate assembly	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005769	early endosome	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009561	megagametogenesis	IEP	HCCA
CC	GO:0009574	preprophase band	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009920	cell plate formation involved in plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0030863	cortical cytoskeleton	IEP	HCCA
CC	GO:0030981	cortical microtubule cytoskeleton	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0034406	cell wall beta-glucan metabolic process	IEP	HCCA
BP	GO:0035195	miRNA-mediated gene silencing	IEP	HCCA
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0048015	phosphatidylinositol-mediated signaling	IEP	HCCA
BP	GO:0048017	inositol lipid-mediated signaling	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0090691	formation of plant organ boundary	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032401	EDC4_WD40	185	498

External Links

No external refs found!

AT3G13300 (VCS)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation