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  5. AT3G12280

AT3G12280 (RBR, ATRBR1, RBR1, RB1, RB)


Aliases : RBR, ATRBR1, RBR1, RB1, RB

Description : retinoblastoma-related 1


Gene families : OG0002400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G12280

Target Alias Description ECC score Gene Family Method Actions
Mp8g18830.1 RBR, ATRBR1,... cell cycle interphase key regulator 0.03 OrthoFinder output from all 47 species
Msp_g03577 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species
Sam_g27981 No alias regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IMP Interproscan
BP GO:0000082 G1/S transition of mitotic cell cycle TAS Interproscan
BP GO:0001558 regulation of cell growth IMP Interproscan
BP GO:0001708 cell fate specification IMP Interproscan
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006261 DNA-templated DNA replication RCA Interproscan
BP GO:0006349 regulation of gene expression by genomic imprinting IPI Interproscan
MF GO:0008134 transcription factor binding TAS Interproscan
BP GO:0008356 asymmetric cell division IGI Interproscan
BP GO:0009553 embryo sac development IMP Interproscan
BP GO:0009555 pollen development IMP Interproscan
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Interproscan
BP GO:0009960 endosperm development IMP Interproscan
BP GO:0010090 trichome morphogenesis IMP Interproscan
BP GO:0010090 trichome morphogenesis RCA Interproscan
BP GO:0022619 generative cell differentiation IMP Interproscan
BP GO:0032875 regulation of DNA endoreduplication IMP Interproscan
BP GO:0042023 DNA endoreduplication RCA Interproscan
BP GO:0048366 leaf development IMP Interproscan
BP GO:0051302 regulation of cell division RCA Interproscan
BP GO:0051726 regulation of cell cycle IMP Interproscan
BP GO:0051783 regulation of nuclear division IMP Interproscan
BP GO:2000036 regulation of stem cell population maintenance IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004564 beta-fructofuranosidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005987 sucrose catabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009313 oligosaccharide catabolic process IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
MF GO:0016929 deSUMOylase activity IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044275 cellular carbohydrate catabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046352 disaccharide catabolic process IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR015030 RB_C 885 969
IPR024599 RB_N 94 229
IPR002719 RB_B 730 857
IPR002720 RB_A 406 607
No external refs found!