AT3G01460 (ATMBD9, MBD9)

Aliases : ATMBD9, MBD9

Description : methyl-CPG-binding domain 9

Gene families : OG0006711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006711_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G01460

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00267510	ATMBD9, MBD9,...	Methyl-CpG-binding domain-containing protein 9...	0.1	OrthoFinder output from all 47 species
Adi_g011991	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.05	OrthoFinder output from all 47 species
Aev_g28617	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.02	OrthoFinder output from all 47 species
Ala_g17040	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.08	OrthoFinder output from all 47 species
Als_g03908	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.05	OrthoFinder output from all 47 species
Aop_g10631	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.07	OrthoFinder output from all 47 species
Aspi01Gene65658.t1	ATMBD9, MBD9,...	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.04	OrthoFinder output from all 47 species
Azfi_s0092.g043010	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.03	OrthoFinder output from all 47 species
Cba_g07789	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.02	OrthoFinder output from all 47 species
Ceric.19G068300.1	ATMBD9, MBD9,...	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.08	OrthoFinder output from all 47 species
Dac_g15509	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.02	OrthoFinder output from all 47 species
Dcu_g37526	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g19882	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01020232001	ATMBD9, MBD9	Methyl-CpG-binding domain-containing protein 9...	0.08	OrthoFinder output from all 47 species
Gb_22434	ATMBD9, MBD9	Methyl-CpG-binding domain-containing protein 9...	0.06	OrthoFinder output from all 47 species
LOC_Os02g09920.1	ATMBD9, MBD9,...	Methyl-CpG-binding domain-containing protein 9...	0.04	OrthoFinder output from all 47 species
Len_g47194	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.06	OrthoFinder output from all 47 species
MA_10435977g0020	ATMBD9, MBD9	Methyl-CpG-binding domain-containing protein 9...	0.11	OrthoFinder output from all 47 species
MA_41907g0010	ATMBD9, MBD9	Methyl-CpG-binding domain-containing protein 9...	0.11	OrthoFinder output from all 47 species
Mp8g01420.1	ATMBD9, MBD9	Methyl-CpG-binding domain-containing protein 9...	0.08	OrthoFinder output from all 47 species
Msp_g32029	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.03	OrthoFinder output from all 47 species
Nbi_g06340	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.02	OrthoFinder output from all 47 species
Pir_g15536	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.04	OrthoFinder output from all 47 species
Ppi_g08937	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013974	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.06	OrthoFinder output from all 47 species
Sam_g18047	No alias	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.04	OrthoFinder output from all 47 species
Solyc05g005640.4.1	ATMBD9, MBD9,...	Methyl-CpG-binding domain-containing protein 9...	0.07	OrthoFinder output from all 47 species
Spa_g49760	ATMBD9, MBD9	component *(MBD9) of SWR1 chromatin remodeling complex &...	0.08	OrthoFinder output from all 47 species
Tin_g01305	ATMBD9, MBD9	component *(MBD9) of SWR1 chromaTin remodeling complex &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0001763	morphogenesis of a branching structure	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004402	histone acetyltransferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IMP	Interproscan
BP	GO:0006473	protein acetylation	None	Extended
BP	GO:0006475	internal protein amino acid acetylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007155	cell adhesion	RCA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
MF	GO:0008080	N-acetyltransferase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008327	methyl-CpG binding	ISS	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010223	secondary shoot formation	IMP	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010346	shoot axis formation	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016407	acetyltransferase activity	None	Extended
MF	GO:0016410	N-acyltransferase activity	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016573	histone acetylation	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0018393	internal peptidyl-lysine acetylation	None	Extended
BP	GO:0018394	peptidyl-lysine acetylation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0034212	peptide N-acetyltransferase activity	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042393	histone binding	IPI	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043966	histone H3 acetylation	IMP	Interproscan
BP	GO:0043967	histone H4 acetylation	IMP	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048573	photoperiodism, flowering	IMP	Interproscan
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
CC	GO:0000325	plant-type vacuole	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0000919	cell plate assembly	IEP	HCCA
BP	GO:0001708	cell fate specification	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004430	1-phosphatidylinositol 4-kinase activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	HCCA
BP	GO:0006482	protein demethylation	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008214	protein dealkylation	IEP	HCCA
MF	GO:0008281	sulfonylurea receptor activity	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
CC	GO:0009574	preprophase band	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0009920	cell plate formation involved in plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
BP	GO:0016577	histone demethylation	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030007	cellular potassium ion homeostasis	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0030863	cortical cytoskeleton	IEP	HCCA
CC	GO:0030981	cortical microtubule cytoskeleton	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031057	negative regulation of histone modification	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033169	histone H3-K9 demethylation	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0035065	regulation of histone acetylation	IEP	HCCA
BP	GO:0035067	negative regulation of histone acetylation	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0040014	regulation of multicellular organism growth	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
CC	GO:0043076	megasporocyte nucleus	IEP	HCCA
CC	GO:0043078	polar nucleus	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
CC	GO:0048471	perinuclear region of cytoplasm	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
MF	GO:0051015	actin filament binding	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
MF	GO:0052742	phosphatidylinositol kinase activity	IEP	HCCA
BP	GO:0055075	potassium ion homeostasis	IEP	HCCA
BP	GO:0070076	histone lysine demethylation	IEP	HCCA
MF	GO:0070273	phosphatidylinositol-4-phosphate binding	IEP	HCCA
MF	GO:0070300	phosphatidic acid binding	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0070988	demethylation	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0090691	formation of plant organ boundary	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
BP	GO:1901983	regulation of protein acetylation	IEP	HCCA
BP	GO:1901984	negative regulation of protein acetylation	IEP	HCCA
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	HCCA
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003888	FYrich_N	411	438
IPR003889	FYrich_C	669	695
IPR001739	Methyl_CpG_DNA-bd	258	373
IPR019787	Znf_PHD-finger	86	131
IPR019787	Znf_PHD-finger	1289	1335
IPR028942	WHIM1_dom	1372	1413
IPR028941	WHIM2_dom	1628	1726

External Links

No external refs found!

AT3G01460 (ATMBD9, MBD9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation