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  5. AT2G46020

AT2G46020 (CHA2, CHR2, BRM, ATBRM)


Aliases : CHA2, CHR2, BRM, ATBRM

Description : transcription regulatory protein SNF2, putative


Gene families : OG0002912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G46020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 CHA2, CHR2, BRM,... Chromatin organisation.chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Aev_g20232 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g20545 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22916 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g14182 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023559 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g21427 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G062400.1 CHA2, CHR2, BRM,... SMARCA component *(SYD/BRM/MINU) & original description:... 0.16 OrthoFinder output from all 47 species
Cre07.g325700 CHA2, CHR2, BRM, ATBRM ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Dcu_g02061 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g20820 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g21790 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26923 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026952001 CHA2, CHR2, BRM, ATBRM Chromatin organisation.chromatin remodeling... 0.18 OrthoFinder output from all 47 species
Len_g02927 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g07447 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.07 OrthoFinder output from all 47 species
MA_137856g0010 CHA2, CHR2, BRM, ATBRM chromatin remodeling factor (Snf2) 0.09 OrthoFinder output from all 47 species
MA_637555g0010 CHA2, CHR2, BRM, ATBRM ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
Mp1g17010.1 CHA2, CHR2, BRM, ATBRM chromatin remodeling factor (Snf2) 0.1 OrthoFinder output from all 47 species
Msp_g15066 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g40776 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g16650 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g28370 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29869 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g42346 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57219 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29021 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g37198 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.11 OrthoFinder output from all 47 species
Solyc01g094800.4.1 CHA2, CHR2, BRM,... chromatin remodeling factor (Snf2) 0.1 OrthoFinder output from all 47 species
Spa_g50991 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g56003 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g13768 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013442_P001 CHA2, CHR2, BRM,... chromatin remodeling factor (Snf2) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003682 chromatin binding IDA Interproscan
MF GO:0004386 helicase activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0010199 organ boundary specification between lateral organs and the meristem IGI Interproscan
BP GO:0040029 epigenetic regulation of gene expression IMP Interproscan
BP GO:0040029 epigenetic regulation of gene expression RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
CC GO:0000932 P-body IEP HCCA
BP GO:0001763 morphogenesis of a branching structure IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
CC GO:0009574 preprophase band IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010071 root meristem specification IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
CC GO:0016514 SWI/SNF complex IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019216 regulation of lipid metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0030863 cortical cytoskeleton IEP HCCA
CC GO:0030981 cortical microtubule cytoskeleton IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035195 miRNA-mediated gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0035278 miRNA-mediated gene silencing by inhibition of translation IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0040014 regulation of multicellular organism growth IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043966 histone H3 acetylation IEP HCCA
BP GO:0043967 histone H4 acetylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048015 phosphatidylinositol-mediated signaling IEP HCCA
BP GO:0048017 inositol lipid-mediated signaling IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048441 petal development IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0050994 regulation of lipid catabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071365 cellular response to auxin stimulus IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090213 regulation of radial pattern formation IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 1310 1421
IPR000330 SNF2_N 993 1288
No external refs found!