AT2G39880 (AtMYB25, MYB25)

Aliases : AtMYB25, MYB25

Description : myb domain protein 25

Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G39880
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00252990	AtMYB124,...	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
AMTR_s00109p00061950	MYB3R-1,...	RNA biosynthesis.transcriptional activation.MYB...	0.06	OrthoFinder output from all 47 species
AT1G43330	No alias	Homeodomain-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT2G25230	MYB100, AtMYB100	myb domain protein 100	0.04	OrthoFinder output from all 47 species
AT5G11050	MYB64, AtMYB64	myb domain protein 64	0.05	OrthoFinder output from all 47 species
AT5G40430	MYB22, AtMYB22	myb domain protein 22	0.03	OrthoFinder output from all 47 species
AT5G58850	ATMYB119, MYB119	myb domain protein 119	0.06	OrthoFinder output from all 47 species
Als_g14702	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15721	LOF2, MYB105, ATMYB105	MYB class-R2R3 subgroup-21 transcription factor &...	0.04	OrthoFinder output from all 47 species
Als_g15763	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g27407	ATMYB3R5, MYB3R-5	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12966	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g31222	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene47785.t1	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.06G081400.1	ATMYB3R5,...	R1R2R3-MYB transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.13G051800.1	MYB88, AtMYB88,...	MYB class-R2R3 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.33G050100.1	MYB3R-1,...	R1R2R3-MYB transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.39G017100.1	MYB88, AtMYB88,...	MYB class-R2R3 transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dcu_g12641	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01035663001	MYB3R-1,...	RNA biosynthesis.transcriptional activation.MYB...	0.05	OrthoFinder output from all 47 species
LOC_Os12g13570.1	MYB3R-1,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Len_g27982	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g01931	AtMYB109, MYB109	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.03	OrthoFinder output from all 47 species
Lfl_g18053	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_89624g0010	LOF2, MYB105, ATMYB105	transcription factor (MYB)	0.05	OrthoFinder output from all 47 species
Msp_g20543	ATMYB3R5, MYB3R-5	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g44400	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g02270	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10936	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g12915	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015735	MYB3R-1,...	R1R2R3-MYB transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Solyc11g071300.2.1	MYB3R-1,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0010374	stomatal complex development	IEP	HCCA
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090558	plant epidermis development	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT2G39880 (AtMYB25, MYB25)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation