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  5. AT2G27600

AT2G27600 (VPS4, SKD1, ATSKD1)


Aliases : VPS4, SKD1, ATSKD1

Description : AAA-type ATPase family protein


Gene families : OG0002846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G27600
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Aev_g44141 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.03 OrthoFinder output from all 47 species
Dde_g02152 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005771 multivesicular body IDA Interproscan
BP GO:0006623 protein targeting to vacuole RCA Interproscan
BP GO:0006635 fatty acid beta-oxidation RCA Interproscan
BP GO:0006869 lipid transport RCA Interproscan
BP GO:0006891 intra-Golgi vesicle-mediated transport RCA Interproscan
BP GO:0007032 endosome organization IMP Interproscan
BP GO:0007033 vacuole organization IMP Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
BP GO:0010091 trichome branching IMP Interproscan
BP GO:0010351 lithium ion transport RCA Interproscan
BP GO:0016192 vesicle-mediated transport IMP Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
BP GO:0016197 endosomal transport RCA Interproscan
BP GO:0016558 protein import into peroxisome matrix RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR007330 MIT_dom 7 70
IPR015415 Vps4_C 368 432
IPR003959 ATPase_AAA_core 169 298
No external refs found!