AT1G72010

Description : TCP family transcription factor

Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G72010

Target	Alias	Description	ECC score	Gene Family Method
AT1G35560	No alias	TCP family transcription factor	0.04	OrthoFinder output from all 47 species
Adi_g055980	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060147	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g069116	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g22689	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g03271	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g09029	No alias	TCP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene06134.t1	AtTCP14, TCP14,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g15454	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g07512	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g01691	No alias	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07622	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07691	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g69980.1	AT-TCP20, TCP20,...	transcription factor (TCP). TCP20 circadian clock...	0.03	OrthoFinder output from all 47 species
LOC_Os11g07460.1	LOC_Os11g07460	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
MA_81710g0010	No alias	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
Ore_g07074	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g07139	No alias	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g13049	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017047	No alias	TCP-type transcription factor & original description: CDS=1-1221	0.02	OrthoFinder output from all 47 species
Solyc03g006800.1.1	Solyc03g006800	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
Zm00001e023066_P001	Zm00001e023066	transcription factor (TCP). CHE circadian clock repression factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005249	voltage-gated potassium channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
CC	GO:0008076	voltage-gated potassium channel complex	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010119	regulation of stomatal movement	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0022843	voltage-gated monoatomic cation channel activity	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
CC	GO:0034702	ion channel complex	IEP	HCCA
CC	GO:0034703	cation channel complex	IEP	HCCA
CC	GO:0034705	potassium channel complex	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	63	168

External Links

No external refs found!

AT1G72010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation