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  5. AT1G65260

AT1G65260 (PTAC4, VIPP1)


Aliases : PTAC4, VIPP1

Description : plastid transcriptionally active 4


Gene families : OG0002497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G65260
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00198600 PTAC4, VIPP1,... Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Adi_g019901 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.08 OrthoFinder output from all 47 species
Aev_g12997 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Als_g03586 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Aob_g05137 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Aop_g01210 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
Aop_g01641 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene57071.t1 PTAC4, VIPP1,... protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035535 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
Cba_g09434 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.06 OrthoFinder output from all 47 species
Ceric.21G054600.1 PTAC4, VIPP1,... protein involved in plastid membrane fusion *(VIPP) &... 0.08 OrthoFinder output from all 47 species
Ceric.25G000800.1 PTAC4, VIPP1,... protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Dcu_g03592 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Dcu_g15380 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Dde_g03283 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Dde_g07895 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
Ehy_g07429 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01019065001 PTAC4, VIPP1 Photosynthesis.photophosphorylation.photosystem... 0.1 OrthoFinder output from all 47 species
Gb_32562 PTAC4, VIPP1 VIPP protein involved in plastid membrane fusion 0.08 OrthoFinder output from all 47 species
LOC_Os01g67000.1 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.05 OrthoFinder output from all 47 species
Len_g11598 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
MA_503650g0010 PTAC4, VIPP1 VIPP protein involved in plastid membrane fusion 0.03 OrthoFinder output from all 47 species
Mp5g20680.1 PTAC4, VIPP1 VIPP protein involved in plastid membrane fusion 0.05 OrthoFinder output from all 47 species
Msp_g08193 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.06 OrthoFinder output from all 47 species
Msp_g20762 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.02 OrthoFinder output from all 47 species
Nbi_g07063 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.07 OrthoFinder output from all 47 species
Ore_g16052 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.05 OrthoFinder output from all 47 species
Pir_g02210 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Ppi_g10062 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.1 OrthoFinder output from all 47 species
Sam_g06663 No alias protein involved in plastid membrane fusion *(VIPP) &... 0.04 OrthoFinder output from all 47 species
Smo93752 PTAC4, VIPP1 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Solyc11g008990.2.1 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.1 OrthoFinder output from all 47 species
Spa_g11958 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.09 OrthoFinder output from all 47 species
Tin_g13395 PTAC4, VIPP1 protein involved in plastid membrane fusion *(VIPP) &... 0.09 OrthoFinder output from all 47 species
Zm00001e018980_P001 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.11 OrthoFinder output from all 47 species
Zm00001e028569_P001 PTAC4, VIPP1,... VIPP protein involved in plastid membrane fusion 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009508 plastid chromosome IDA Interproscan
CC GO:0009534 chloroplast thylakoid IDA Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010027 thylakoid membrane organization IMP Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
CC GO:0016020 membrane ISS Interproscan
BP GO:0016050 vesicle organization IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004462 lactoylglutathione lyase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004829 threonine-tRNA ligase activity IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0005982 starch metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006435 threonyl-tRNA aminoacylation IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006569 tryptophan catabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009074 aromatic amino acid family catabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
CC GO:0009543 chloroplast thylakoid lumen IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009773 photosynthetic electron transport in photosystem I IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
MF GO:0009977 proton motive force dependent protein transmembrane transporter activity IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
CC GO:0010319 stromule IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0019252 starch biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031361 obsolete integral component of thylakoid membrane IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0031977 thylakoid lumen IEP HCCA
CC GO:0031978 plastid thylakoid lumen IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0033218 amide binding IEP HCCA
CC GO:0033281 TAT protein transport complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0035970 peptidyl-threonine dephosphorylation IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042436 indole-containing compound catabolic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043235 receptor complex IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR007157 PspA_IM30 73 289
No external refs found!