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  5. AT1G55040

AT1G55040


Description : zinc finger (Ran-binding) family protein


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55040

Target Alias Description ECC score Gene Family Method Actions
Adi_g054823 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108029 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19944 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15963 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25497 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G046600.1 Ceric.26G046600 RNA editing factor *(OZ) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g22806 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11704 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18300 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01014166001 No alias No description available 0.08 OrthoFinder output from all 47 species
Gb_05351 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_13912 No alias RNA editing factor (OZ-type) 0.09 OrthoFinder output from all 47 species
Gb_38905 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.1 OrthoFinder output from all 47 species
LOC_Os03g50430.1 LOC_Os03g50430 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.11 OrthoFinder output from all 47 species
Lfl_g06216 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
MA_10436123g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_854125g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.1 OrthoFinder output from all 47 species
Ore_g03681 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g00990 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06378 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07101 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50896 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g099230.3.1 Solyc01g099230 RNA editing factor (OZ-type) 0.06 OrthoFinder output from all 47 species
Tin_g20697 No alias RNA ediTing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012200_P002 Zm00001e012200 RNA editing factor (OZ-type) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0048046 apoplast IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004821 histidine-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006427 histidyl-tRNA aminoacylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
MF GO:0030619 U1 snRNA binding IEP HCCA
MF GO:0030620 U2 snRNA binding IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045694 regulation of embryo sac egg cell differentiation IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 405 432
IPR001876 Znf_RanBP2 371 399
No external refs found!