AT1G19850 (MP, IAA24, ARF5)

Aliases : MP, IAA24, ARF5

Description : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G19850

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	ARF6,...	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
AT3G61830	ARF18	auxin response factor 18	0.05	OrthoFinder output from all 47 species
Adi_g014286	ARF4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057044	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g080414	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g088063	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g089250	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110090	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g32730	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g02260	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12700	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene61150.t1	ARF16, Aspi01Gene61150	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0011.g012740	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: CDS=1-2724	0.04	OrthoFinder output from all 47 species
Azfi_s0013.g013413	ARF10	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.02	OrthoFinder output from all 47 species
Azfi_s0129.g048848	ARF6	ARF-type transcription factor & original description: CDS=56-2815	0.03	OrthoFinder output from all 47 species
Azfi_s0384.g067487	ARF8, ATARF8	ARF-type transcription factor & original description:...	0.07	OrthoFinder output from all 47 species
Dac_g05759	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g07132	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g22354	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g30682	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01011008001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
GSVIVT01021552001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_39685	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_39686	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_39786	ARF16	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os01g48060.1	ARF3, ETT, LOC_Os01g48060	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g57610.1	ARF8, ATARF8,...	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
LOC_Os10g33940.1	ARF16, LOC_Os10g33940	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os12g29520.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os12g41950.1	ARF6, LOC_Os12g41950	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Len_g08347	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g11557	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g17368	ARF6	ARF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
MA_10432580g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Nbi_g13614	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g42774	ARF16	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g50454	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000212	ARF4	not classified & original description: CDS=1-1212	0.02	OrthoFinder output from all 47 species
Solyc04g081240.2.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Solyc07g016180.3.1	ARF19, IAA22,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Solyc07g042260.4.1	ARF19, IAA22,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Solyc08g008380.4.1	ARF9, Solyc08g008380	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Spa_g29254	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g55179	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g27871	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003229_P002	ARF6, Zm00001e003229	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e006577_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e012670_P001	ARF16, Zm00001e012670	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e014833_P002	ARF1, Zm00001e014833	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e015164_P002	ARF10, Zm00001e015164	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e021527_P006	HSS, ARF1-BP,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e028396_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e041910_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000578	embryonic axis specification	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007155	cell adhesion	RCA	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009741	response to brassinosteroid	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009798	axis specification	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009880	embryonic pattern specification	None	Extended
BP	GO:0009886	post-embryonic animal morphogenesis	RCA	Interproscan
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009908	flower development	IGI	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009942	longitudinal axis specification	IMP	Interproscan
BP	GO:0009944	polarity specification of adaxial/abaxial axis	RCA	Interproscan
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010016	shoot system morphogenesis	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	IMP	Interproscan
BP	GO:0010051	xylem and phloem pattern formation	RCA	Interproscan
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010073	meristem maintenance	RCA	Interproscan
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010305	leaf vascular tissue pattern formation	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0031048	RNA-mediated heterochromatin formation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042802	identical protein binding	IPI	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0048364	root development	IGI	Interproscan
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048439	flower morphogenesis	RCA	Interproscan
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048507	meristem development	IGI	Interproscan
BP	GO:0048507	meristem development	RCA	Interproscan
BP	GO:0048519	negative regulation of biological process	RCA	Interproscan
BP	GO:0048527	lateral root development	RCA	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0090696	post-embryonic plant organ development	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	IEP	HCCA
BP	GO:0002237	response to molecule of bacterial origin	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
MF	GO:0008810	cellulase activity	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	158	259
IPR010525	ARF_dom	284	367
IPR033389	AUX/IAA_dom	785	879

External Links

No external refs found!

AT1G19850 (MP, IAA24, ARF5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation