AT1G19220 (ARF19, IAA22, ARF11)

Aliases : ARF19, IAA22, ARF11

Description : auxin response factor 19

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G19220

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00034p00110140	ARF4	RNA biosynthesis.transcriptional activation.B3...	0.07	OrthoFinder output from all 47 species
Adi_g025684	ARF9	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057783	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g084657	ARF19, IAA22, ARF11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g103241	TIR5, MSG1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22849	ARF10	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os02g41800.1	ARF16, LOC_Os02g41800	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Len_g12892	ARF6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_85955g0020	ARF19, IAA22, ARF11	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Ore_g15165	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29226	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g04517	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc11g069500.2.1	ARF10, Solyc11g069500	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Solyc12g006350.3.1	ARF6, Solyc12g006350	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Spa_g55449	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	TAS	Interproscan
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007155	cell adhesion	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	IMP	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IMP	Interproscan
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009733	response to auxin	NAS	Interproscan
BP	GO:0009741	response to brassinosteroid	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010311	lateral root formation	IGI	Interproscan
BP	GO:0010583	response to cyclopentenone	RCA	Interproscan
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IDA	Interproscan
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0046983	protein dimerization activity	IDA	Interproscan
BP	GO:0048364	root development	None	Extended
BP	GO:0048366	leaf development	IGI	Interproscan
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048527	lateral root development	IGI	Interproscan
BP	GO:0048527	lateral root development	RCA	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0090696	post-embryonic plant organ development	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1905393	plant organ formation	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	252	334
IPR003340	B3_DNA-bd	126	227
IPR033389	AUX/IAA_dom	956	1044

External Links

No external refs found!

AT1G19220 (ARF19, IAA22, ARF11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation