AT1G03060 (SPI)

Aliases : SPI

Description : Beige/BEACH domain ;WD domain, G-beta repeat protein

Gene families : OG0003198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003198_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G03060
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AT4G02660	No alias	Beige/BEACH domain ;WD domain, G-beta repeat protein	0.03	OrthoFinder output from all 47 species
Adi_g060551	SPI	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ala_g19813	SPI	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g30609	SPI	not classified & original description: none	0.13	OrthoFinder output from all 47 species
Aspi01Gene37984.t1	SPI, Aspi01Gene37984	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0012.g012952	SPI	not classified & original description: CDS=1-3084	0.01	OrthoFinder output from all 47 species
Azfi_s0034.g025324	SPI	not classified & original description: CDS=1-3033	0.08	OrthoFinder output from all 47 species
Ceric.12G054200.1	SPI, Ceric.12G054200	not classified & original description: pacid=50600477...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021108.14	No alias	Protein SPIRRIG OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dcu_g48259	SPI	not classified & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01003123001	SPI	BEACH domain-containing protein A2 OS=Arabidopsis thaliana	0.12	OrthoFinder output from all 47 species
Gb_31352	SPI	Protein SPIRRIG OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species
Gb_31353	SPI	Protein SPIRRIG OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os03g53280.1	SPI, LOC_Os03g53280	Protein SPIRRIG OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Len_g08661	SPI	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g13081	SPI	not classified & original description: none	0.07	OrthoFinder output from all 47 species
MA_12084g0010	SPI	Protein SPIRRIG OS=Arabidopsis thaliana...	0.12	OrthoFinder output from all 47 species
Mp2g15880.1	SPI	Protein SPIRRIG OS=Arabidopsis thaliana...	0.14	OrthoFinder output from all 47 species
Msp_g13653	SPI	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g19282	SPI	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29798	SPI	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0219.g026126	SPI	not classified & original description: CDS=210-10721	0.06	OrthoFinder output from all 47 species
Smo432626	SPI	Protein SPIRRIG OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc09g065700.3.1	SPI, Solyc09g065700	Protein SPIRRIG OS=Arabidopsis thaliana...	0.12	OrthoFinder output from all 47 species
Zm00001e005644_P001	SPI, Zm00001e005644	Protein SPIRRIG OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007033	vacuole organization	IMP	Interproscan
BP	GO:0007165	signal transduction	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IDA	Interproscan
BP	GO:0009825	multidimensional cell growth	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010090	trichome morphogenesis	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
CC	GO:0005769	early endosome	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008131	primary amine oxidase activity	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
BP	GO:0010311	lateral root formation	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0030742	GTP-dependent protein binding	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032504	multicellular organism reproduction	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035195	miRNA-mediated gene silencing	IEP	HCCA
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0048015	phosphatidylinositol-mediated signaling	IEP	HCCA
BP	GO:0048017	inositol lipid-mediated signaling	IEP	HCCA
BP	GO:0048281	inflorescence morphogenesis	IEP	HCCA
BP	GO:0048283	indeterminate inflorescence morphogenesis	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048468	cell development	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0050994	regulation of lipid catabolic process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0090213	regulation of radial pattern formation	IEP	HCCA
BP	GO:0090436	leaf pavement cell development	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0090691	formation of plant organ boundary	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023362	PH-BEACH_dom	2877	2926
IPR001680	WD40_repeat	3376	3408
IPR000409	BEACH_dom	2965	3244

External Links

No external refs found!

AT1G03060 (SPI)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation