AT1G02560 (NCLPP1, CLPP5, NCLPP5)

Aliases : NCLPP1, CLPP5, NCLPP5

Description : nuclear encoded CLP protease 5

Gene families : OG0000552 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000552_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G02560
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00200340	NCLPP4, CLPP4,...	ATP-dependent Clp protease proteolytic subunit 4,...	0.04	OrthoFinder output from all 47 species
AMTR_s00105p00043000	CLPP3, NCLPP3,...	Protein degradation.peptidase families.serine-type...	0.03	OrthoFinder output from all 47 species
Adi_g016781	NCLPP4, CLPP4	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Adi_g017748	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Adi_g022234	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Adi_g107266	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Aev_g00900	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Aev_g15453	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.05	OrthoFinder output from all 47 species
Ala_g05972	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Als_g27637	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Aob_g00777	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Aop_g09541	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Aop_g13962	NCLPP4, CLPP4	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Cba_g02522	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.06	OrthoFinder output from all 47 species
Cba_g13955	NCLPP4, CLPP4	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Ceric.01G078500.1	NCLPP1, CLPP5,...	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020553.201	NCLPP4, CLPP4	ATP-dependent Clp protease proteolytic subunit 4,...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021522.2	NCLPP1, CLPP5, NCLPP5	ATP-dependent Clp protease proteolytic subunit 5,...	0.02	OrthoFinder output from all 47 species
Dac_g01402	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Dac_g18251	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Dde_g12975	NCLPP4, CLPP4	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Dde_g52147	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.05	OrthoFinder output from all 47 species
GSVIVT01028130001	NCLPP1, CLPP5, NCLPP5	Protein degradation.peptidase families.serine-type...	0.04	OrthoFinder output from all 47 species
Gb_14695	CLPP3, NCLPP3	proteolytic core component ClpP1/3-6 of chloroplast...	0.03	OrthoFinder output from all 47 species
Len_g01683	NCLPP4, CLPP4	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Len_g18844	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Lfl_g05262	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.07	OrthoFinder output from all 47 species
Lfl_g30598	NCLPP4, CLPP4	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Lfl_g37808	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
MA_159916g0010	CLPP3, NCLPP3	proteolytic core component ClpP1/3-6 of chloroplast...	0.05	OrthoFinder output from all 47 species
MA_164820g0010	CLPP3, NCLPP3	proteolytic core component ClpP1/3-6 of chloroplast...	0.05	OrthoFinder output from all 47 species
MA_806g0010	NCLPP1, CLPP5, NCLPP5	ATP-dependent Clp protease proteolytic subunit 5,...	0.07	OrthoFinder output from all 47 species
Mp1g12460.1	NCLPP4, CLPP4	proteolytic core component ClpP1/3-6 of chloroplast...	0.03	OrthoFinder output from all 47 species
Msp_g00395	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.07	OrthoFinder output from all 47 species
Nbi_g07728	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Nbi_g12183	NCLPP4, CLPP4	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Ore_g08101	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Pir_g00910	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Pnu_g17018	CLPP3, NCLPP3	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.02	OrthoFinder output from all 47 species
Ppi_g00602	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.04	OrthoFinder output from all 47 species
Sam_g16959	No alias	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.03	OrthoFinder output from all 47 species
Solyc01g100520.3.1	NCLPP1, CLPP5,...	proteolytic core component ClpP1/3-6 of chloroplast...	0.04	OrthoFinder output from all 47 species
Tin_g04964	NCLPP1, CLPP5, NCLPP5	proteolytic core component *(ClpP1/3-6) of chloroplast...	0.06	OrthoFinder output from all 47 species
Zm00001e002511_P002	NCLPP4, CLPP4,...	proteolytic core component ClpP1/3-6 of chloroplast...	0.03	OrthoFinder output from all 47 species
Zm00001e015198_P001	CLPP2, NCLPP7,...	ATP-dependent Clp protease proteolytic subunit 2,...	0.04	OrthoFinder output from all 47 species
Zm00001e023057_P001	CLPP2, NCLPP7,...	ATP-dependent Clp protease proteolytic subunit 2,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	RCA	Interproscan
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0005984	disaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
CC	GO:0009368	endopeptidase Clp complex	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	IDA	Interproscan
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IDA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0017014	protein nitrosylation	None	Extended
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IDA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018198	peptidyl-cysteine modification	None	Extended
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	HCCA
MF	GO:0004462	lactoylglutathione lyase activity	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006089	lactate metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0009438	methylglyoxal metabolic process	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
CC	GO:0010319	stromule	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0042182	ketone catabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046185	aldehyde catabolic process	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
BP	GO:0051596	methylglyoxal catabolic process	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	HCCA
BP	GO:0080005	photosystem stoichiometry adjustment	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023562	ClpP/TepA	109	287

External Links

No external refs found!

AT1G02560 (NCLPP1, CLPP5, NCLPP5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation