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  5. Als_g26663

Als_g26663


Description : not classified & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g26663

Target Alias Description ECC score Gene Family Method Actions
Adi_g019211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Aev_g38233 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Ala_g02674 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ala_g04484 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14550 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Aob_g16006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.29G060800.1 Ceric.29G060800 not classified & original description: pacid=50624742... 0.12 OrthoFinder output from all 47 species
Ceric.29G061100.1 Ceric.29G061100 XRN4-exoribonuclease cofactor *(LARP1) & original... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.93 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.1 OrthoFinder output from all 47 species
Dcu_g19294 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g19632 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.07 OrthoFinder output from all 47 species
Dde_g10054 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g07929 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01006333001 No alias La-related protein 1C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01029892001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_28833 No alias XRN4-exoribonuclease cofactor (LARP1) 0.04 OrthoFinder output from all 47 species
Lfl_g02117 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g18424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_113816g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_114481g0010 No alias La-related protein 1B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Msp_g15347 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g11601 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g19204 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g44181 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Pir_g10955 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Pir_g51223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13014 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13658 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g26426 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g061980.3.1 Solyc02g061980 La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g50019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46280 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 43 98
No external refs found!