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  5. Als_g03869

Als_g03869


Description : component *(VPS18) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0004357 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004357_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g03869
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00178640 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Adi_g089360 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.04 OrthoFinder output from all 47 species
Aev_g04175 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.04 OrthoFinder output from all 47 species
Ala_g20601 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.02 OrthoFinder output from all 47 species
Aob_g17351 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.04 OrthoFinder output from all 47 species
Ceric.34G031500.1 Ceric.34G031500 component *(VPS18) of HOPS/CORVET membrane tethering... 0.09 OrthoFinder output from all 47 species
Cre07.g328550 No alias Vesicle trafficking.target membrane... 0.01 OrthoFinder output from all 47 species
Dcu_g13571 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.1 OrthoFinder output from all 47 species
GSVIVT01030005001 No alias Vesicle trafficking.target membrane... 0.07 OrthoFinder output from all 47 species
Gb_14455 No alias component VPS18 of HOPS/CORVET membrane tethering complexes 0.03 OrthoFinder output from all 47 species
LOC_Os08g08060.1 LOC_Os08g08060 component VPS18 of HOPS/CORVET membrane tethering complexes 0.05 OrthoFinder output from all 47 species
Len_g00750 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
Lfl_g02278 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.06 OrthoFinder output from all 47 species
MA_10429172g0010 No alias component VPS18 of HOPS/CORVET membrane tethering complexes 0.03 OrthoFinder output from all 47 species
Mp4g11360.1 No alias component VPS18 of HOPS/CORVET membrane tethering complexes 0.02 OrthoFinder output from all 47 species
Ore_g08914 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.05 OrthoFinder output from all 47 species
Ore_g12405 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.04 OrthoFinder output from all 47 species
Spa_g16913 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
Tin_g11490 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 630 782
IPR007810 Pep3_Vps18 290 440
No external refs found!