1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g01991

Als_g01991 (emb1507)


Aliases : emb1507

Description : RNA helicase *(Brr2) & original description: none


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01991

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 emb1507,... RNA processing.RNA splicing.spliceosome... 0.05 OrthoFinder output from all 47 species
AMTR_s00077p00041680 emb1507,... DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative 0.03 OrthoFinder output from all 47 species
Ala_g04355 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40053 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08117 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05989 emb1507 RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.31G022500.1 emb1507, Ceric.31G022500 RNA helicase *(Brr2) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.27 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.29 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12553 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19260 emb1507 RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g04070 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12876 emb1507 RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01010769001 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.07 OrthoFinder output from all 47 species
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
Gb_27895 emb1507 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
LOC_Os02g01740.1 emb1507, LOC_Os02g01740 RNA helicase (Brr2) 0.05 OrthoFinder output from all 47 species
Len_g08641 emb1507 RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
Len_g21125 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05048 emb1507 RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g09106 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
MA_81219g0020 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.04 OrthoFinder output from all 47 species
MA_81219g0030 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.06 OrthoFinder output from all 47 species
Mp1g06890.1 emb1507 RNA helicase (Brr2) 0.04 OrthoFinder output from all 47 species
Pir_g09832 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015385 emb1507 RNA helicase *(Brr2) & original description: CDS=1-6507 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021333 emb1507 RNA helicase *(Brr2) & original description: CDS=88-5190 0.03 OrthoFinder output from all 47 species
Smo144158 emb1507 RNA processing.RNA splicing.spliceosome... 0.04 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.06 OrthoFinder output from all 47 species
Spa_g52342 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07743 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR041094 Brr2_helicase_PWI 267 376
IPR001650 Helicase_C 740 881
IPR011545 DEAD/DEAH_box_helicase_dom 506 681
IPR004179 Sec63-dom 1838 2156
IPR004179 Sec63-dom 1005 1307
IPR011545 DEAD/DEAH_box_helicase_dom 1352 1520
No external refs found!