Coexpression cluster: Cluster_3 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003677 DNA binding 8.2% (5/61) 3.79 3.1e-05 0.001157
GO:0016772 transferase activity, transferring phosphorus-containing groups 9.84% (6/61) 3.49 1.6e-05 0.001191
GO:0071704 organic substance metabolic process 14.75% (9/61) 2.34 6.6e-05 0.001224
GO:0044238 primary metabolic process 14.75% (9/61) 2.39 5e-05 0.001232
GO:0016740 transferase activity 9.84% (6/61) 2.95 0.000124 0.001532
GO:0008152 metabolic process 14.75% (9/61) 2.18 0.000149 0.001572
GO:0003676 nucleic acid binding 9.84% (6/61) 2.98 0.000112 0.001652
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.92% (3/61) 4.6 0.000266 0.001966
GO:0034062 5'-3' RNA polymerase activity 4.92% (3/61) 4.6 0.000266 0.001966
GO:0097747 RNA polymerase activity 4.92% (3/61) 4.6 0.000266 0.001966
GO:0016779 nucleotidyltransferase activity 4.92% (3/61) 4.34 0.000451 0.002226
GO:0097659 nucleic acid-templated transcription 4.92% (3/61) 4.39 0.000403 0.002292
GO:0006351 DNA-templated transcription 4.92% (3/61) 4.39 0.000403 0.002292
GO:0043170 macromolecule metabolic process 11.48% (7/61) 2.34 0.000448 0.002368
GO:0032774 RNA biosynthetic process 4.92% (3/61) 4.27 0.000521 0.002411
GO:0090304 nucleic acid metabolic process 6.56% (4/61) 3.55 0.000389 0.002616
GO:1901362 organic cyclic compound biosynthetic process 4.92% (3/61) 3.8 0.001343 0.003312
GO:0097159 organic cyclic compound binding 11.48% (7/61) 2.08 0.001268 0.003352
GO:1901363 heterocyclic compound binding 11.48% (7/61) 2.08 0.001268 0.003352
GO:0003824 catalytic activity 13.11% (8/61) 1.89 0.001328 0.003388
GO:0140098 catalytic activity, acting on RNA 4.92% (3/61) 3.98 0.000923 0.003416
GO:0018130 heterocycle biosynthetic process 4.92% (3/61) 3.85 0.001213 0.003451
GO:0044237 cellular metabolic process 11.48% (7/61) 2.1 0.001187 0.003515
GO:0006139 nucleobase-containing compound metabolic process 6.56% (4/61) 3.22 0.000904 0.003522
GO:0019438 aromatic compound biosynthetic process 4.92% (3/61) 3.87 0.001151 0.003548
GO:0008150 biological_process 14.75% (9/61) 1.72 0.001524 0.003638
GO:0006725 cellular aromatic compound metabolic process 6.56% (4/61) 3.15 0.001093 0.003678
GO:1901360 organic cyclic compound metabolic process 6.56% (4/61) 3.13 0.001145 0.003683
GO:0034654 nucleobase-containing compound biosynthetic process 4.92% (3/61) 4.0 0.000897 0.003688
GO:0006807 nitrogen compound metabolic process 11.48% (7/61) 2.18 0.000854 0.003717
GO:0046483 heterocycle metabolic process 6.56% (4/61) 3.15 0.001077 0.003794
GO:0140640 catalytic activity, acting on a nucleic acid 4.92% (3/61) 3.69 0.001666 0.003853
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 3.28% (2/61) 4.93 0.001986 0.004454
GO:0016798 hydrolase activity, acting on glycosyl bonds 3.28% (2/61) 4.85 0.002218 0.004827
GO:0016070 RNA metabolic process 4.92% (3/61) 3.51 0.002354 0.004977
GO:0003674 molecular_function 18.03% (11/61) 1.34 0.003512 0.00722
GO:0006270 DNA replication initiation 1.64% (1/61) 8.06 0.003755 0.00751
GO:0006468 protein phosphorylation 4.92% (3/61) 3.17 0.00455 0.008861
GO:0004672 protein kinase activity 4.92% (3/61) 3.14 0.004842 0.009187
GO:0009987 cellular process 11.48% (7/61) 1.71 0.005391 0.009974
GO:0016310 phosphorylation 4.92% (3/61) 3.03 0.006035 0.010385
GO:0016773 phosphotransferase activity, alcohol group as acceptor 4.92% (3/61) 3.03 0.006035 0.010385
GO:0016301 kinase activity 4.92% (3/61) 3.03 0.006035 0.010385
GO:0036211 protein modification process 4.92% (3/61) 2.81 0.009126 0.015007
GO:0005975 carbohydrate metabolic process 3.28% (2/61) 3.81 0.009055 0.01523
GO:0006793 phosphorus metabolic process 4.92% (3/61) 2.73 0.010601 0.01601
GO:0006796 phosphate-containing compound metabolic process 4.92% (3/61) 2.73 0.010601 0.01601
GO:0043412 macromolecule modification 4.92% (3/61) 2.76 0.010018 0.016117
GO:0005488 binding 11.48% (7/61) 1.53 0.010286 0.016195
GO:0034641 cellular nitrogen compound metabolic process 6.56% (4/61) 2.13 0.013147 0.019457
GO:0140096 catalytic activity, acting on a protein 4.92% (3/61) 2.42 0.018803 0.027283
GO:0009059 macromolecule biosynthetic process 4.92% (3/61) 2.24 0.025838 0.036769
GO:0044271 cellular nitrogen compound biosynthetic process 4.92% (3/61) 2.16 0.029711 0.041484
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Actinostachys digitata HCCA Cluster_153 0.016 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_366 0.023 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_58 0.019 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_129 0.02 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_139 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_99 0.016 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_1 0.017 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_11 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_90 0.018 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_168 0.017 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_217 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_33 0.021 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_39 0.015 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_56 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_57 0.022 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_77 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_82 0.021 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_83 0.015 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_93 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_100 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_109 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_121 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_156 0.019 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_159 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_167 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_176 0.034 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_71 0.015 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_11 0.026 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_38 0.02 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_64 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_314 0.016 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_130 0.016 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_135 0.017 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_177 0.023 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_179 0.022 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_189 0.022 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_84 0.017 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_36 0.016 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_63 0.018 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_94 0.02 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_101 0.018 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_112 0.029 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_124 0.018 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_51 0.02 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_95 0.016 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_8 0.02 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_69 0.022 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_63 0.017 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_159 0.022 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_34 0.017 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_83 0.018 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_182 0.019 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_107 0.017 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_122 0.018 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_186 0.021 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_190 0.02 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_393 0.024 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_72 0.018 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_112 0.021 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_114 0.023 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_7 0.041 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_8 0.02 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_13 0.041 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_21 0.027 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_27 0.045 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_32 0.045 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_40 0.035 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_45 0.029 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_49 0.039 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_53 0.051 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_55 0.042 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_56 0.031 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_61 0.032 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_65 0.02 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_67 0.042 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_71 0.047 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_75 0.039 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_79 0.019 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_91 0.035 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_93 0.04 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_98 0.029 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_99 0.049 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_102 0.035 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_110 0.02 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_144 0.017 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_160 0.022 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_11 0.02 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_46 0.019 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_61 0.023 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_13 0.019 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_40 0.016 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_81 0.016 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_15 0.022 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_152 0.017 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_71 0.02 OrthoFinder output from all 47 species Compare
Sequences (61) (download table)

InterPro Domains

GO Terms

Family Terms