Coexpression cluster: Cluster_172 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 56.14% (96/171) 1.3 0.0 0.0
GO:0005488 binding 36.84% (63/171) 1.49 0.0 0.0
GO:0008150 biological_process 29.24% (50/171) 1.26 0.0 0.0
GO:0003824 catalytic activity 23.39% (40/171) 1.21 0.0 3.8e-05
GO:0044281 small molecule metabolic process 6.43% (11/171) 2.79 1e-06 5.1e-05
GO:0008152 metabolic process 19.88% (34/171) 1.31 1e-06 6.2e-05
GO:0072521 purine-containing compound metabolic process 4.09% (7/171) 3.69 1e-06 7.5e-05
GO:0006163 purine nucleotide metabolic process 4.09% (7/171) 3.71 1e-06 8.1e-05
GO:0055086 nucleobase-containing small molecule metabolic process 4.09% (7/171) 3.52 3e-06 9.5e-05
GO:0006753 nucleoside phosphate metabolic process 4.09% (7/171) 3.59 2e-06 9.7e-05
GO:0005975 carbohydrate metabolic process 5.85% (10/171) 2.75 3e-06 9.7e-05
GO:0009117 nucleotide metabolic process 4.09% (7/171) 3.61 2e-06 9.9e-05
GO:0005852 eukaryotic translation initiation factor 3 complex 1.75% (3/171) 6.71 3e-06 0.000105
GO:0043167 ion binding 16.37% (28/171) 1.39 3e-06 0.000112
GO:0005515 protein binding 11.7% (20/171) 1.7 4e-06 0.000118
GO:0016052 carbohydrate catabolic process 2.92% (5/171) 4.37 5e-06 0.000123
GO:1901575 organic substance catabolic process 4.09% (7/171) 3.43 5e-06 0.000124
GO:0009056 catabolic process 4.09% (7/171) 3.4 5e-06 0.00013
GO:0009987 cellular process 19.3% (33/171) 1.17 9e-06 0.000195
GO:0009259 ribonucleotide metabolic process 3.51% (6/171) 3.62 1.1e-05 0.000211
GO:0019693 ribose phosphate metabolic process 3.51% (6/171) 3.62 1.1e-05 0.000211
GO:0009150 purine ribonucleotide metabolic process 3.51% (6/171) 3.62 1.1e-05 0.000211
GO:0019637 organophosphate metabolic process 4.09% (7/171) 3.15 1.6e-05 0.000308
GO:0046872 metal ion binding 8.19% (14/171) 1.9 2.7e-05 0.000335
GO:0009132 nucleoside diphosphate metabolic process 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0006165 nucleoside diphosphate phosphorylation 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0006757 ATP generation from ADP 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0009185 ribonucleoside diphosphate metabolic process 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0009179 purine ribonucleoside diphosphate metabolic process 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0046031 ADP metabolic process 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0046939 nucleotide phosphorylation 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0009135 purine nucleoside diphosphate metabolic process 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0006096 glycolytic process 2.34% (4/171) 4.56 2.7e-05 0.000344
GO:0003676 nucleic acid binding 9.94% (17/171) 1.66 3.1e-05 0.000347
GO:0043169 cation binding 8.19% (14/171) 1.89 3e-05 0.000352
GO:0032787 monocarboxylic acid metabolic process 2.92% (5/171) 3.83 3e-05 0.000359
GO:0032991 protein-containing complex 5.85% (10/171) 2.35 3.3e-05 0.000362
GO:0006090 pyruvate metabolic process 2.34% (4/171) 4.48 3.4e-05 0.000363
GO:0097159 organic cyclic compound binding 17.54% (30/171) 1.17 2.2e-05 0.000381
GO:1901363 heterocyclic compound binding 17.54% (30/171) 1.17 2.2e-05 0.000381
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.92% (5/171) 3.69 4.8e-05 0.000446
GO:0046034 ATP metabolic process 2.92% (5/171) 3.69 4.8e-05 0.000446
GO:0009199 ribonucleoside triphosphate metabolic process 2.92% (5/171) 3.69 4.8e-05 0.000446
GO:0009144 purine nucleoside triphosphate metabolic process 2.92% (5/171) 3.69 4.8e-05 0.000446
GO:0071704 organic substance metabolic process 16.37% (28/171) 1.18 4.3e-05 0.000449
GO:0009141 nucleoside triphosphate metabolic process 2.92% (5/171) 3.66 5.2e-05 0.000477
GO:0044238 primary metabolic process 15.79% (27/171) 1.2 4.7e-05 0.000484
GO:0006139 nucleobase-containing compound metabolic process 5.85% (10/171) 2.23 6.3e-05 0.00057
GO:1901135 carbohydrate derivative metabolic process 3.51% (6/171) 3.1 8e-05 0.000702
GO:0051641 cellular localization 3.51% (6/171) 3.08 8.6e-05 0.000741
GO:0016051 carbohydrate biosynthetic process 2.34% (4/171) 3.99 0.000125 0.001058
GO:0046483 heterocycle metabolic process 5.85% (10/171) 2.11 0.000129 0.00107
GO:0006725 cellular aromatic compound metabolic process 5.85% (10/171) 2.08 0.000153 0.001247
GO:0003743 translation initiation factor activity 2.34% (4/171) 3.9 0.000161 0.001281
GO:0015031 protein transport 2.92% (5/171) 3.3 0.000169 0.001321
GO:0070727 cellular macromolecule localization 2.92% (5/171) 3.27 0.000188 0.001327
GO:0008104 protein localization 2.92% (5/171) 3.27 0.000188 0.001327
GO:0033036 macromolecule localization 2.92% (5/171) 3.27 0.000188 0.001327
GO:0030117 membrane coat 1.75% (3/171) 4.8 0.000177 0.00134
GO:1901360 organic cyclic compound metabolic process 5.85% (10/171) 2.05 0.000177 0.001363
GO:0045184 establishment of protein localization 2.92% (5/171) 3.27 0.000184 0.001366
GO:0008270 zinc ion binding 4.09% (7/171) 2.58 0.000197 0.001367
GO:0051649 establishment of localization in cell 2.92% (5/171) 3.2 0.000236 0.001589
GO:0046907 intracellular transport 2.92% (5/171) 3.2 0.000236 0.001589
GO:0043436 oxoacid metabolic process 3.51% (6/171) 2.72 0.000339 0.002216
GO:0019752 carboxylic acid metabolic process 3.51% (6/171) 2.72 0.000339 0.002216
GO:0016192 vesicle-mediated transport 2.34% (4/171) 3.58 0.000376 0.002349
GO:0016491 oxidoreductase activity 7.02% (12/171) 1.7 0.000374 0.00237
GO:0006082 organic acid metabolic process 3.51% (6/171) 2.69 0.000368 0.00237
GO:0006886 intracellular protein transport 2.34% (4/171) 3.51 0.000452 0.002784
GO:0071705 nitrogen compound transport 2.92% (5/171) 2.99 0.000461 0.0028
GO:0046914 transition metal ion binding 5.26% (9/171) 2.0 0.000478 0.002862
GO:0044237 cellular metabolic process 12.87% (22/171) 1.12 0.000497 0.002935
GO:0071702 organic substance transport 2.92% (5/171) 2.9 0.000611 0.003561
GO:0006091 generation of precursor metabolites and energy 2.34% (4/171) 3.37 0.000651 0.003742
GO:0042254 ribosome biogenesis 1.17% (2/171) 5.54 0.000849 0.004813
GO:0008135 translation factor activity, RNA binding 2.34% (4/171) 3.25 0.000887 0.004838
GO:0045182 translation regulator activity 2.34% (4/171) 3.25 0.000887 0.004838
GO:0090079 translation regulator activity, nucleic acid binding 2.34% (4/171) 3.25 0.000887 0.004838
GO:0008047 enzyme activator activity 1.17% (2/171) 5.46 0.000947 0.005102
GO:0022613 ribonucleoprotein complex biogenesis 1.17% (2/171) 5.39 0.001051 0.00559
GO:0006094 gluconeogenesis 1.17% (2/171) 5.25 0.001273 0.006533
GO:0019319 hexose biosynthetic process 1.17% (2/171) 5.25 0.001273 0.006533
GO:0046364 monosaccharide biosynthetic process 1.17% (2/171) 5.25 0.001273 0.006533
GO:0031420 alkali metal ion binding 1.17% (2/171) 5.06 0.001646 0.008154
GO:0004743 pyruvate kinase activity 1.17% (2/171) 5.06 0.001646 0.008154
GO:0030955 potassium ion binding 1.17% (2/171) 5.06 0.001646 0.008154
GO:0006796 phosphate-containing compound metabolic process 5.85% (10/171) 1.61 0.001781 0.008436
GO:0006793 phosphorus metabolic process 5.85% (10/171) 1.61 0.001781 0.008436
GO:0005992 trehalose biosynthetic process 1.17% (2/171) 5.01 0.00178 0.008621
GO:0044085 cellular component biogenesis 1.17% (2/171) 5.01 0.00178 0.008621
GO:0005575 cellular_component 11.7% (20/171) 1.04 0.001858 0.008706
GO:0046351 disaccharide biosynthetic process 1.17% (2/171) 4.85 0.002213 0.010042
GO:0030120 vesicle coat 1.17% (2/171) 4.85 0.002213 0.010042
GO:0006006 glucose metabolic process 1.17% (2/171) 4.85 0.002213 0.010042
GO:0005991 trehalose metabolic process 1.17% (2/171) 4.8 0.002368 0.010631
GO:0006807 nitrogen compound metabolic process 11.7% (20/171) 0.99 0.002682 0.011917
GO:0009312 oligosaccharide biosynthetic process 1.17% (2/171) 4.66 0.002861 0.012581
GO:0005737 cytoplasm 1.75% (3/171) 3.32 0.003529 0.015362
GO:0019318 hexose metabolic process 1.17% (2/171) 4.46 0.003779 0.016126
GO:0005984 disaccharide metabolic process 1.17% (2/171) 4.46 0.003779 0.016126
GO:0016579 protein deubiquitination 1.17% (2/171) 4.42 0.003977 0.016642
GO:0070646 protein modification by small protein removal 1.17% (2/171) 4.42 0.003977 0.016642
GO:0005996 monosaccharide metabolic process 1.17% (2/171) 4.39 0.00418 0.017322
GO:0044262 cellular carbohydrate metabolic process 1.75% (3/171) 3.18 0.00455 0.018675
GO:0009311 oligosaccharide metabolic process 1.17% (2/171) 4.32 0.004599 0.018701
GO:0030234 enzyme regulator activity 1.75% (3/171) 3.12 0.00512 0.020625
GO:0008233 peptidase activity 2.92% (5/171) 2.15 0.005768 0.02302
GO:0004843 cysteine-type deubiquitinase activity 1.17% (2/171) 4.12 0.005969 0.023178
GO:0101005 deubiquitinase activity 1.17% (2/171) 4.12 0.005969 0.023178
GO:1901564 organonitrogen compound metabolic process 9.94% (17/171) 0.98 0.005863 0.023183
GO:0110154 RNA decapping 0.58% (1/171) 7.12 0.007159 0.025292
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 0.58% (1/171) 7.12 0.007159 0.025292
GO:0110156 methylguanosine-cap decapping 0.58% (1/171) 7.12 0.007159 0.025292
GO:0042176 regulation of protein catabolic process 0.58% (1/171) 7.12 0.007159 0.025292
GO:0009894 regulation of catabolic process 0.58% (1/171) 7.12 0.007159 0.025292
GO:0000502 proteasome complex 0.58% (1/171) 7.12 0.007159 0.025292
GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity 0.58% (1/171) 7.12 0.007159 0.025292
GO:0034641 cellular nitrogen compound metabolic process 7.02% (12/171) 1.2 0.006601 0.025402
GO:0035091 phosphatidylinositol binding 1.17% (2/171) 4.04 0.006716 0.025615
GO:0019783 ubiquitin-like protein peptidase activity 1.17% (2/171) 4.01 0.006973 0.026364
GO:0036094 small molecule binding 8.77% (15/171) 1.03 0.007052 0.026429
GO:0098772 molecular function regulator activity 1.75% (3/171) 2.9 0.007823 0.027412
GO:0098796 membrane protein complex 2.34% (4/171) 2.32 0.008834 0.030704
GO:0031369 translation initiation factor binding 0.58% (1/171) 6.71 0.009534 0.031609
GO:0043085 positive regulation of catalytic activity 0.58% (1/171) 6.71 0.009534 0.031609
GO:0000956 nuclear-transcribed mRNA catabolic process 0.58% (1/171) 6.71 0.009534 0.031609
GO:0004019 adenylosuccinate synthase activity 0.58% (1/171) 6.71 0.009534 0.031609
GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity 0.58% (1/171) 6.71 0.009534 0.031609
GO:0006508 proteolysis 2.92% (5/171) 1.98 0.00932 0.032137
GO:0140677 molecular function activator activity 1.17% (2/171) 3.75 0.009791 0.032212
GO:0043168 anion binding 8.19% (14/171) 1.01 0.01058 0.034546
GO:0004470 malic enzyme activity 0.58% (1/171) 6.39 0.011903 0.036646
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity 0.58% (1/171) 6.39 0.011903 0.036646
GO:0006402 mRNA catabolic process 0.58% (1/171) 6.39 0.011903 0.036646
GO:0004347 glucose-6-phosphate isomerase activity 0.58% (1/171) 6.39 0.011903 0.036646
GO:0016615 malate dehydrogenase activity 0.58% (1/171) 6.39 0.011903 0.036646
GO:0030131 clathrin adaptor complex 0.58% (1/171) 6.39 0.011903 0.036646
GO:0044093 positive regulation of molecular function 0.58% (1/171) 6.39 0.011903 0.036646
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 0.58% (1/171) 6.39 0.011903 0.036646
GO:0000287 magnesium ion binding 1.17% (2/171) 3.6 0.012015 0.036726
GO:0044283 small molecule biosynthetic process 1.75% (3/171) 2.61 0.013376 0.040601
GO:0030119 AP-type membrane coat adaptor complex 0.58% (1/171) 6.12 0.014267 0.042702
GO:0017056 structural constituent of nuclear pore 0.58% (1/171) 6.12 0.014267 0.042702
GO:0016071 mRNA metabolic process 1.17% (2/171) 3.44 0.0148 0.043991
GO:0034637 cellular carbohydrate biosynthetic process 1.17% (2/171) 3.4 0.015535 0.045861
GO:1905369 endopeptidase complex 0.58% (1/171) 5.9 0.016625 0.047454
GO:0015940 pantothenate biosynthetic process 0.58% (1/171) 5.9 0.016625 0.047454
GO:0006401 RNA catabolic process 0.58% (1/171) 5.9 0.016625 0.047454
GO:0015939 pantothenate metabolic process 0.58% (1/171) 5.9 0.016625 0.047454
GO:0005543 phospholipid binding 1.17% (2/171) 3.33 0.017053 0.048353
GO:0005524 ATP binding 5.85% (10/171) 1.14 0.016553 0.048534
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_104 0.028 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_216 0.026 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_57 0.015 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_91 0.083 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_86 0.022 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_97 0.018 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_93 0.022 OrthoFinder output from all 47 species Compare
Sequences (171) (download table)

InterPro Domains

GO Terms

Family Terms