1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g46690

Cba_g46690


Description : assembly factor involved in RuBisCo assembly *(RbcX) & original description: none


Gene families : OG0005102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005102_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g46690

Target Alias Description ECC score Gene Family Method Actions
Aev_g32609 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Aob_g01138 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Aob_g25994 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.08 OrthoFinder output from all 47 species
Aop_g00191 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene63852.t1 Aspi01Gene63852 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0262.g060824 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Ceric.33G059700.1 Ceric.33G059700 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Dac_g08983 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.1 OrthoFinder output from all 47 species
Dcu_g04377 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.09 OrthoFinder output from all 47 species
Dde_g46091 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.1 OrthoFinder output from all 47 species
Gb_02161 No alias RbcX assembly factor involved in RuBisCo assembly 0.04 OrthoFinder output from all 47 species
Gb_25793 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g59320.1 LOC_Os03g59320 RbcX assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species
LOC_Os07g38230.1 LOC_Os07g38230 RbcX assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species
Len_g00251 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Lfl_g05877 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Mp1g26500.1 No alias RbcX assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species
Mp2g23580.1 No alias RbcX assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species
Ore_g04011 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Pir_g00338 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Pnu_g13514 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Pnu_g19931 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Ppi_g00617 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Sam_g25402 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Solyc01g087190.4.1 Solyc01g087190 RbcX assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species
Spa_g13070 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Zm00001e011815_P001 Zm00001e011815 RbcX assembly factor involved in RuBisCo assembly 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0044183 protein folding chaperone IEA Interproscan
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003435 Chaperonin_RcbX 116 217
No external refs found!