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  5. Cba_g35564

Cba_g35564


Description : protein involved in PS-II assembly *(SLR1470) & original description: none


Gene families : OG0008544 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008544_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g35564

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00244200 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G14345 No alias NAD(P)-linked oxidoreductase superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g06770 No alias protein involved in PS-II assembly *(SLR1470) & original... 0.06 OrthoFinder output from all 47 species
Als_g53997 No alias protein involved in PS-II assembly *(SLR1470) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008761 No alias protein involved in PS-II assembly *(SLR1470) & original... 0.05 OrthoFinder output from all 47 species
Ceric.30G065900.1 Ceric.30G065900 protein involved in PS-II assembly *(SLR1470) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020941.46 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre08.g358540 No alias No description available 0.06 OrthoFinder output from all 47 species
Dac_g10006 No alias protein involved in PS-II assembly *(SLR1470) & original... 0.04 OrthoFinder output from all 47 species
LOC_Os03g07440.1 LOC_Os03g07440 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g01054 No alias protein involved in PS-II assembly *(SLR1470) & original... 0.08 OrthoFinder output from all 47 species
MA_409389g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ppi_g33274 No alias protein involved in PS-II assembly *(SLR1470) & original... 0.04 OrthoFinder output from all 47 species
Spa_g04525 No alias protein involved in PS-II assembly *(SLR1470) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005182 DUF304 119 189
No external refs found!