Cba_g26011

Description : component *(uS6c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g26011
Cluster	HCCA: Cluster_288

Target	Alias	Description	ECC score	Gene Family Method
AT1G64510	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.06	OrthoFinder output from all 47 species
Aev_g04389	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g02976	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Als_g05365	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Als_g19098	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aob_g08781	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aop_g30964	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031290	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ceric.10G083400.1	Ceric.10G083400	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.32G022300.1	Ceric.32G022300	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cre12.g520600	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dac_g02644	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dcu_g40728	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g06910	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g04427	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01019593001	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Gb_07403	No alias	component psRPS6 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
LOC_Os03g62630.1	LOC_Os03g62630	component psRPS6 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Len_g38836	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g06876	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Mp4g07210.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Msp_g00928	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Nbi_g25871	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ore_g08524	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ore_g16705	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g00320	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pnu_g10315	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ppi_g06171	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009778	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sam_g19470	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Smo58368	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Solyc08g082690.2.1	Solyc08g082690	component psRPS6 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Spa_g17715	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Spa_g37875	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Tin_g06363	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0050992	dimethylallyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0050993	dimethylallyl diphosphate metabolic process	IEP	HCCA
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	111	208

External Links

No external refs found!

Cba_g26011

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation