Cba_g25951

Description : component *(eL6) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g25951
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00218700	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT1G18540	No alias	Ribosomal protein L6 family protein	0.03	OrthoFinder output from all 47 species
AT1G74050	No alias	Ribosomal protein L6 family protein	0.04	OrthoFinder output from all 47 species
AT1G74060	No alias	Ribosomal protein L6 family protein	0.02	OrthoFinder output from all 47 species
Aop_g06856	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.29G025100.1	Ceric.29G025100	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.127	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Cre01.g011000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g34737	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01032041001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01033532001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_01604	No alias	component RPL6 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os02g37862.1	LOC_Os02g37862	component RPL6 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os04g39700.1	LOC_Os04g39700	component RPL6 of LSU proteome component	0.07	OrthoFinder output from all 47 species
MA_108607g0010	No alias	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp3g11670.1	No alias	component RPL6 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Msp_g07934	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g62336	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c14_4160V3.1	Pp3c14_4160	Ribosomal protein L6 family protein	0.02	OrthoFinder output from all 47 species
Pp3c1_24300V3.1	Pp3c1_24300	Ribosomal protein L6 family protein	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016460	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g06914	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g08583	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g08584	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g31628	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo270686	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc11g012110.2.1	Solyc11g012110	component RPL6 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e014979_P001	Zm00001e014979	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e022840_P001	Zm00001e022840	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e022841_P001	Zm00001e022841	component RPL6 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	166	272
IPR005568	Ribosomal_L6_N	45	94

External Links

No external refs found!

Cba_g25951

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation